RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TOP1P11387 765 aaKnown RBP25.58■■□□□ 1.69
CLN3-207ENST00000395653 TRDNQ13061 729 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 RCSD1Q6JBY9 416 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 ABHD8Q96I13 439 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 GMCL1Q96IK5 515 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 ZSWIM5Q9P217 1185 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 SRRDQ9UH36 339 aa25.58■■□□□ 1.69
CLN3-207ENST00000395653 TNPO2O14787 897 aaKnown RBP25.57■■□□□ 1.68
CLN3-207ENST00000395653 CCNA1P78396 465 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 Q3C1V9 767 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 DGKHQ86XP1 1220 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 ATG4CQ96DT6 458 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 FBXO28Q9NVF7 368 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 BTBD7Q9P203 1132 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 PPP1R9AQ9ULJ8 1098 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 ADAMTS5Q9UNA0 930 aa25.57■■□□□ 1.68
CLN3-207ENST00000395653 E7EWF7 191 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 BMP3P12645 472 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 SLF1Q9BQI6 1058 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 TMEM47Q9BQJ4 181 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 ZKSCAN3Q9BRR0 538 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 HPS5Q9UPZ3 1129 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 TAF6LQ9Y6J9 622 aa25.56■■□□□ 1.68
CLN3-207ENST00000395653 NECTIN1Q15223 517 aa25.55■■□□□ 1.68
CLN3-207ENST00000395653 COA7Q96BR5 231 aa25.55■■□□□ 1.68
CLN3-207ENST00000395653 ZSCAN10Q96SZ4 725 aaPredicted RBP25.55■■□□□ 1.68
CLN3-207ENST00000395653 FEM1BQ9UK73 627 aa25.55■■□□□ 1.68
CLN3-207ENST00000395653 MAPK4P31152 587 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 SLC1A4P43007 532 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 STOX1Q6ZVD7 989 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 RALYLQ86SE5 291 aaKnown RBP25.54■■□□□ 1.68
CLN3-207ENST00000395653 PRPF38AQ8NAV1 312 aaKnown RBP25.54■■□□□ 1.68
CLN3-207ENST00000395653 NCOA7Q8NI08 942 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 ANKS1AQ92625 1134 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 PTCH2Q9Y6C5 1203 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 SLC27A2O14975 620 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 MCCP23508 829 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 PRKCZQ05513 592 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 CCAR1Q8IX12 1150 aaKnown RBP25.54■■□□□ 1.68
CLN3-207ENST00000395653 UBAC1Q9BSL1 405 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 PORCNQ9H237 461 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 HTTP42858 3142 aa25.54■■□□□ 1.68
CLN3-207ENST00000395653 TNKSO95271 1327 aa25.53■■□□□ 1.68
CLN3-207ENST00000395653 VWA5AO00534 786 aa25.53■■□□□ 1.68
CLN3-207ENST00000395653 CREB3L3Q68CJ9 461 aa25.53■■□□□ 1.68
CLN3-207ENST00000395653 SAMD1Q6SPF0 538 aaPredicted RBP25.53■■□□□ 1.68
CLN3-207ENST00000395653 DCAF4Q8WV16 495 aa25.53■■□□□ 1.68
CLN3-207ENST00000395653 SPATC1LQ9H0A9 340 aa25.53■■□□□ 1.68
CLN3-207ENST00000395653 PLA2G6O60733 806 aa25.52■■□□□ 1.68
CLN3-207ENST00000395653 RNF20Q5VTR2 975 aa25.52■■□□□ 1.68
CLN3-207ENST00000395653 CYB5R4Q7L1T6 521 aa25.52■■□□□ 1.68
CLN3-207ENST00000395653 ENAHQ8N8S7 591 aaPredicted RBP25.52■■□□□ 1.68
CLN3-207ENST00000395653 TMEM232C9JQI7 657 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 STAT2P52630 851 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 FAM160B2Q86V87 743 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 SHCBP1Q8NEM2 672 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 RAET1EQ8TD07 263 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 GABRQQ9UN88 632 aa25.51■■□□□ 1.67
CLN3-207ENST00000395653 FLT3LGP49771 235 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 IRF5Q13568 498 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 TMEM132BQ14DG7 1078 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 KCTD1Q719H9 257 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 GPR142Q7Z601 462 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 REPS2Q8NFH8 660 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 CHURC1Q8WUH1 139 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 MOV10L1Q9BXT6 1211 aaKnown RBP25.5■■□□□ 1.67
CLN3-207ENST00000395653 KAT14Q9H8E8 782 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 ISY1Q9ULR0 285 aaKnown RBP25.5■■□□□ 1.67
CLN3-207ENST00000395653 MTMR7Q9Y216 660 aa25.5■■□□□ 1.67
CLN3-207ENST00000395653 REC8O95072 547 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 SNHG28P0DPA3 235 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 FDX1P10109 184 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 PDHBP11177 359 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 RASGRP2Q7LDG7 609 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 PLEKHH3Q7Z736 793 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 MB21D2Q8IYB1 491 aaPredicted RBP25.49■■□□□ 1.67
CLN3-207ENST00000395653 PNMA1Q8ND90 353 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 KIFC2Q96AC6 838 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 GJD2Q9UKL4 321 aa25.49■■□□□ 1.67
CLN3-207ENST00000395653 PLS1Q14651 629 aa25.48■■□□□ 1.67
CLN3-207ENST00000395653 SEC23AQ15436 765 aa25.48■■□□□ 1.67
CLN3-207ENST00000395653 CCDC96Q2M329 555 aa25.48■■□□□ 1.67
CLN3-207ENST00000395653 SOCS4Q8WXH5 440 aa25.48■■□□□ 1.67
CLN3-207ENST00000395653 CWC22Q9HCG8 908 aaKnown RBP25.48■■□□□ 1.67
CLN3-207ENST00000395653 ZNF214Q9UL59 606 aaPredicted RBP25.48■■□□□ 1.67
CLN3-207ENST00000395653 COL11A1P12107 1806 aaPredicted RBP25.48■■□□□ 1.67
CLN3-207ENST00000395653 ZBED4O75132 1171 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 SLC9C1Q4G0N8 1177 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 IFIT1BQ5T764 474 aaKnown RBP25.47■■□□□ 1.67
CLN3-207ENST00000395653 ARMC5Q96C12 935 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 CHMP4CQ96CF2 233 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 MROH8Q9H579 483 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 SLC38A10Q9HBR0 1119 aa25.47■■□□□ 1.67
CLN3-207ENST00000395653 ATP2A1O14983 1001 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 SLC25A27O95847 323 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 ERCC3P19447 782 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 STAT3P40763 770 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 IKQ13123 557 aaPredicted RBP25.46■■□□□ 1.67
CLN3-207ENST00000395653 SART3Q15020 963 aaKnown RBP25.46■■□□□ 1.67
CLN3-207ENST00000395653 RIOX2Q8IUF8 465 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms