RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 RBM28Q9NW13 759 aaKnown RBP23.34■■□□□ 1.33
CLK3-202ENST00000395066 MYH8P13535 1937 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 MARCH10Q8NA82 808 aaPredicted RBP23.34■■□□□ 1.33
CLK3-202ENST00000395066 CTCFLQ8NI51 663 aaPredicted RBP23.34■■□□□ 1.33
CLK3-202ENST00000395066 GDAQ9Y2T3 454 aa23.34■■□□□ 1.33
CLK3-202ENST00000395066 STRCQ7RTU9 1775 aa23.33■■□□□ 1.33
CLK3-202ENST00000395066 ZNF569Q5MCW4 686 aa23.33■■□□□ 1.33
CLK3-202ENST00000395066 PPP2R5BQ15173 497 aa23.33■■□□□ 1.33
CLK3-202ENST00000395066 NSUN4Q96CB9 384 aaKnown RBP23.33■■□□□ 1.33
CLK3-202ENST00000395066 N4BP3O15049 544 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 PDXDC2PQ6P474 469 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 FUT8Q9BYC5 575 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 DCP1AQ9NPI6 582 aaPredicted RBP23.32■■□□□ 1.32
CLK3-202ENST00000395066 SCG2P13521 617 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 ERVK-24P63145 666 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 PLIN2Q99541 437 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 FAM205AQ6ZU69 1335 aa23.32■■□□□ 1.32
CLK3-202ENST00000395066 GPS2Q13227 327 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 UBE4AQ14139 1066 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 FILIP1LQ4L180 1135 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLK3-202ENST00000395066 TRIM49BA6NDI0 452 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 PP2D1A8MPX8 630 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 IQUBQ8NA54 791 aa23.31■■□□□ 1.32
CLK3-202ENST00000395066 DDAH1O94760 285 aa23.3■■□□□ 1.32
CLK3-202ENST00000395066 CAPN2P17655 700 aa23.3■■□□□ 1.32
CLK3-202ENST00000395066 TXLNAP40222 546 aa23.3■■□□□ 1.32
CLK3-202ENST00000395066 JAKMIP3Q5VZ66 844 aa23.3■■□□□ 1.32
CLK3-202ENST00000395066 BSDC1Q9NW68 430 aaPredicted RBP23.3■■□□□ 1.32
CLK3-202ENST00000395066 NELFBQ8WX92 580 aa23.3■■□□□ 1.32
CLK3-202ENST00000395066 TSPY2A6NKD2 308 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 KIF5CO60282 957 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 FGRP09769 529 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CALM1P0DP23 149 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CALM2P0DP24 149 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CALM3P0DP25 149 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 GYS2P54840 703 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 SLC35F6Q8N357 371 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 STAG2Q8N3U4 1231 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 EEF2KMTQ96G04 330 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 TRERF1Q96PN7 1200 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CTAGE1Q96RT6 745 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 NUP88Q99567 741 aaPredicted RBP23.29■■□□□ 1.32
CLK3-202ENST00000395066 USP17L8P0C7I0 530 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CHMP4BP1P59074 171 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 A0A1B0GUL6 1792 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 CCDC151A5D8V7 595 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 BMP15O95972 392 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 LONRF2Q1L5Z9 754 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 RASGRP2Q7LDG7 609 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 TXNRD3Q86VQ6 643 aa23.29■■□□□ 1.32
CLK3-202ENST00000395066 COPB1P53618 953 aaKnown RBP23.28■■□□□ 1.32
CLK3-202ENST00000395066 RAD51AP2Q09MP3 1159 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 PAK1Q13153 545 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 KIF4BQ2VIQ3 1234 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 MUM1L1Q5H9M0 696 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 RCSD1Q6JBY9 416 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 TYW1BQ6NUM6 668 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 PRCPP42785 496 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 PFKFB3Q16875 520 aaPredicted RBP23.28■■□□□ 1.32
CLK3-202ENST00000395066 SLF1Q9BQI6 1058 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 ABHD10Q9NUJ1 306 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 TFR2Q9UP52 801 aa23.28■■□□□ 1.32
CLK3-202ENST00000395066 COL14A1Q05707 1796 aaKnown RBP23.27■■□□□ 1.32
CLK3-202ENST00000395066 KCNJ18B7U540 433 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 KCNJ12Q14500 433 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 BRD3Q15059 726 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 DYNLL2Q96FJ2 89 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 TRIM10Q9UDY6 481 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 PMS1P54277 932 aaKnown RBP23.27■■□□□ 1.32
CLK3-202ENST00000395066 CNGA4Q8IV77 575 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 CHP1Q99653 195 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 NAA15Q9BXJ9 866 aaKnown RBP23.27■■□□□ 1.32
CLK3-202ENST00000395066 MCM9Q9NXL9 1143 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 ZNF652Q9Y2D9 606 aa23.27■■□□□ 1.32
CLK3-202ENST00000395066 PES1O00541 588 aaKnown RBP23.26■■□□□ 1.31
CLK3-202ENST00000395066 GTPBP6O43824 516 aaPredicted RBP23.26■■□□□ 1.31
CLK3-202ENST00000395066 RPN1P04843 607 aaKnown RBP23.26■■□□□ 1.31
CLK3-202ENST00000395066 TCP11X2Q5H9J9 407 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 TBC1D9BQ66K14 1250 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 SRGAP1Q7Z6B7 1085 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 SLC20A2Q08357 652 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 FBXO33Q7Z6M2 555 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 LINC00116Q8NCU8 138 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 PNKPQ96T60 521 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 CRNKL1Q9BZJ0 848 aaKnown RBP23.26■■□□□ 1.31
CLK3-202ENST00000395066 ANKZF1Q9H8Y5 726 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 SUGCTQ9HAC7 445 aa23.26■■□□□ 1.31
CLK3-202ENST00000395066 LIMA1Q9UHB6 759 aaKnown RBP23.26■■□□□ 1.31
CLK3-202ENST00000395066 STAT6P42226 847 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 SF3B3Q15393 1217 aaKnown RBP23.25■■□□□ 1.31
CLK3-202ENST00000395066 RWDD2AQ9UIY3 292 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 COL16A1Q07092 1604 aaPredicted RBP23.25■■□□□ 1.31
CLK3-202ENST00000395066 LAMB2P55268 1798 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 ORC4O43929 436 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 RHOXF2BP0C7M4 288 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 KRT9P35527 623 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 UBXN1Q04323 297 aa23.25■■□□□ 1.31
CLK3-202ENST00000395066 CT47A1Q5JQC4 288 aaPredicted RBP23.25■■□□□ 1.31
CLK3-202ENST00000395066 C4orf32Q8N8J7 132 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms