RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 HHIPL2Q6UWX4 724 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 CEP57L1Q8IYX8 460 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 SWAP70Q9UH65 585 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 USP25Q9UHP3 1055 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 GPR75-ASB3A0A0A6YYF3 556 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 STAT2P52630 851 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 Q3C1V9 767 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 GPC2Q8N158 579 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 STAG2Q8N3U4 1231 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 ZNF830Q96NB3 372 aaPredicted RBP11.71□□□□□ -0.53
COL6A3-205ENST00000392004 EHMT1Q9H9B1 1298 aa11.71□□□□□ -0.53
COL6A3-205ENST00000392004 MED23Q9ULK4 1368 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 DEXIO95424 95 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 TAL1P17542 331 aaPredicted RBP11.71□□□□□ -0.54
COL6A3-205ENST00000392004 KCTD2Q14681 263 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 TAF1CQ15572 869 aaPredicted RBP11.71□□□□□ -0.54
COL6A3-205ENST00000392004 FAM151AQ8WW52 585 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 ZSWIM6Q9HCJ5 1215 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 GPRC5DQ9NZD1 345 aa11.71□□□□□ -0.54
COL6A3-205ENST00000392004 A0A087WWV3 80 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 NOP56O00567 594 aaKnown RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ZSCAN22P10073 491 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 TSKSQ9UJT2 592 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 NOD1Q9Y239 953 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 GOLGA6L6A8MZA4 724 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ADCY7P51828 1080 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 PRR16Q569H4 304 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ARHGEF16Q5VV41 709 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 SEPT14Q6ZU15 432 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 REXO1Q8N1G1 1221 aaKnown RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 PSMD1Q99460 953 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 RBM28Q9NW13 759 aaKnown RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ERCC3P19447 782 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 NR5A1Q13285 461 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 DGKZQ13574 1117 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 SHROOM1Q2M3G4 852 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 APOBEC3HQ6NTF7 200 aaKnown RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L15C9J2P7 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L13C9JLJ4 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L11C9JVI0 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L18D6R9N7 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L22D6RA61 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L17D6RBQ6 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L19D6RCP7 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L20D6RJB6 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 RGL2O15211 777 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ADCY5O95622 1261 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 BRD1O95696 1058 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 POTEIP0CG38 1075 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 POTEJP0CG39 1038 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L24Q0WX57 530 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 KIF22Q14807 665 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 USP17L6PQ6QN14 398 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 ERCC4Q92889 916 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 DHX58Q96C10 678 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 RTFDC1Q9BY42 306 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-205ENST00000392004 CEP131Q9UPN4 1083 aa11.7□□□□□ -0.54
COL6A3-205ENST00000392004 TOPAZ1Q8N9V7 1692 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CSPG5O95196 566 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 IL1R1P14778 569 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 UTP14CQ5TAP6 766 aaKnown RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 DHX37Q8IY37 1157 aaKnown RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CNNM3Q8NE01 707 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 RAB34Q9BZG1 259 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 GBA2Q9HCG7 927 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 ABCC6O95255 1503 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CCL15-CCL14A0A0B4J2E2 113 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 RPS12P25398 132 aaKnown RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CDC25AP30304 524 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 MAP3K9P80192 1104 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 HTRA3P83110 453 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CCL15Q16663 113 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 CCDC183Q5T5S1 534 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 ANO1Q5XXA6 986 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 RPAP3Q9H6T3 665 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 TPM3P06753 285 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 DMTNQ08495 405 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 NCAPH2Q6IBW4 605 aa11.69□□□□□ -0.54
COL6A3-205ENST00000392004 SNRNP48Q6IEG0 339 aaKnown RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 TTC12Q9H892 705 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-205ENST00000392004 HARSP12081 509 aaKnown RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 CYP4A11Q02928 519 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 PDCL2Q8N4E4 241 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 GLG1Q92896 1179 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 ZDHHC15Q96MV8 337 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 GTPBP4Q9BZE4 634 aaKnown RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 PABPC4Q13310 644 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 MPHOSPH6Q99547 160 aaKnown RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 TCHPQ9BT92 498 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 MMRN2Q9H8L6 949 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 IGBP1P78318 339 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 CDC37Q16543 378 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 TSC1Q92574 1164 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 GTF3C6Q969F1 213 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 INTS4Q96HW7 963 aaKnown RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 RIOK1Q9BRS2 568 aaKnown RBP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 AMNQ9BXJ7 453 aa11.68□□□□□ -0.54
COL6A3-205ENST00000392004 FTOQ9C0B1 505 aaKnown RBP eCLIP11.68□□□□□ -0.54
COL6A3-205ENST00000392004 A0A1B0GVL5 298 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms