RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PACS2Q86VP3 889 aa20.83■□□□□ 0.92
CCDC3-201ENST00000378825 FAM71BQ8TC56 605 aa20.83■□□□□ 0.92
CCDC3-201ENST00000378825 RABEP2Q9H5N1 569 aa20.83■□□□□ 0.92
CCDC3-201ENST00000378825 EIF3CLB5ME19 914 aaKnown RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 KCNJ18B7U540 433 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 ZNF185O15231 689 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 NDUFA10O95299 355 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 BCAMP50895 628 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 PIP4K2BP78356 416 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 MRPS25P82663 173 aaKnown RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 UBXN1Q04323 297 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 KCNJ12Q14500 433 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 TCP11X2Q5H9J9 407 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 NELFBQ8WX92 580 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 EIF3CQ99613 913 aaKnown RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 UBAC1Q9BSL1 405 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 EPN1Q9Y6I3 576 aaPredicted RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 EXOC5O00471 708 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 PMS1P54277 932 aaKnown RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 MAP3K12Q12852 859 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 NPY5RQ15761 445 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 ACSBG1Q96GR2 724 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 PHF20Q9BVI0 1012 aa20.82■□□□□ 0.92
CCDC3-201ENST00000378825 LIMA1Q9UHB6 759 aaKnown RBP20.82■□□□□ 0.92
CCDC3-201ENST00000378825 CDHR2Q9BYE9 1310 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 RCCD1A6NED2 376 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 KRT2P35908 639 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 IRF2BP1Q8IU81 584 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 DUSP10Q9Y6W6 482 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 ITIH6Q6UXX5 1313 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 NID2Q14112 1375 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 HERVK_113P62684 666 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 FUT2Q10981 343 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 E2F4Q16254 413 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 TRAPPC11Q7Z392 1133 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 GPIHBP1Q8IV16 184 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 BCL9O00512 1426 aa20.81■□□□□ 0.92
CCDC3-201ENST00000378825 ZC3H4Q9UPT8 1303 aaKnown RBP20.81■□□□□ 0.92
CCDC3-201ENST00000378825 FGFR2P21802 821 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 SEC23AQ15436 765 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 STRCQ7RTU9 1775 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 WTIPA6NIX2 430 aaPredicted RBP20.8■□□□□ 0.92
CCDC3-201ENST00000378825 PRCPP42785 496 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 PUM3Q15397 648 aaKnown RBP20.8■□□□□ 0.92
CCDC3-201ENST00000378825 ENAHQ8N8S7 591 aaPredicted RBP20.8■□□□□ 0.92
CCDC3-201ENST00000378825 CCDC51Q96ER9 411 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 EHD4Q9H223 541 aa20.8■□□□□ 0.92
CCDC3-201ENST00000378825 LRRC10BA6NIK2 292 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PDE2AO00408 941 aaPredicted RBP20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PDE8AO60658 829 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PRPF6O94906 941 aaKnown RBP20.79■□□□□ 0.92
CCDC3-201ENST00000378825 IVLP07476 585 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 MCM7P33993 719 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 USP14P54578 494 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PPARAQ07869 468 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PAK1Q13153 545 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 TTC38Q5R3I4 469 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 PDXDC2PQ6P474 469 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 WDR59Q6PJI9 974 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 LPIN2Q92539 896 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 LACRTQ9GZZ8 138 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 HPCAL4Q9UM19 191 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 CCDC196A0A1B0GTZ2 297 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 UQCRFS1P1P0C7P4 283 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 KLK7P49862 253 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 WDR93Q6P2C0 686 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 CCDC148Q8NFR7 591 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 MYH2Q9UKX2 1941 aa20.79■□□□□ 0.92
CCDC3-201ENST00000378825 BCL9LQ86UU0 1499 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 SEMA3EO15041 775 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 PLIN2Q99541 437 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 RNF26Q9BY78 433 aaPredicted RBP20.78■□□□□ 0.92
CCDC3-201ENST00000378825 NKRFO15226 690 aaKnown RBP eCLIP20.78■□□□□ 0.92
CCDC3-201ENST00000378825 PDE4CQ08493 712 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 SUSD4Q5VX71 490 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 PIK3AP1Q6ZUJ8 805 aa20.78■□□□□ 0.92
CCDC3-201ENST00000378825 RPS6KA5O75582 802 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 GGCXP38435 758 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 CCDC122Q5T0U0 273 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 TNFRSF25Q93038 417 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 GNL3LQ9NVN8 582 aaKnown RBP20.77■□□□□ 0.92
CCDC3-201ENST00000378825 ITGB4P16144 1822 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 KDM4FA0A1W2PPD8 638 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 NMT2O60551 498 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 TUBB2AQ13885 445 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 MSL3Q8N5Y2 521 aaKnown RBP20.77■□□□□ 0.92
CCDC3-201ENST00000378825 TUBB2BQ9BVA1 445 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 GBP3Q9H0R5 595 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 AGPAT5Q9NUQ2 364 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 RWDD2AQ9UIY3 292 aa20.77■□□□□ 0.92
CCDC3-201ENST00000378825 PP2D1A8MPX8 630 aa20.77■□□□□ 0.91
CCDC3-201ENST00000378825 ADAMTS2O95450 1211 aa20.77■□□□□ 0.91
CCDC3-201ENST00000378825 NACAP1Q9BZK3 213 aa20.77■□□□□ 0.91
CCDC3-201ENST00000378825 PARP1P09874 1014 aaKnown RBP20.76■□□□□ 0.91
CCDC3-201ENST00000378825 CYP27A1Q02318 531 aa20.76■□□□□ 0.91
CCDC3-201ENST00000378825 EZH2Q15910 746 aaKnown RBP20.76■□□□□ 0.91
CCDC3-201ENST00000378825 AFAP1L1Q8TED9 768 aa20.76■□□□□ 0.91
CCDC3-201ENST00000378825 FERMT2Q96AC1 680 aa20.76■□□□□ 0.91
CCDC3-201ENST00000378825 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.76■□□□□ 0.91
CCDC3-201ENST00000378825 LRP2BPQ9P2M1 347 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms