RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TRAF5O00463 557 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 HMOX1P09601 288 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 TNFAIP3P21580 790 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 RSAD2Q8WXG1 361 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 ZBED2Q9BTP6 218 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 NDE1Q9NXR1 346 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 SLC4A7Q9Y6M7 1214 aa9.56□□□□□ -0.88
LIG3-202ENST00000378526 ESRRAP11474 423 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 HLA-DPA1P20036 260 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 SFSWAPQ12872 951 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 MED21Q13503 144 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 TRMT10CQ7L0Y3 403 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 PPP1R42Q7Z4L9 355 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 CDKL2Q92772 493 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 FAM96AQ9H5X1 160 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 STK24Q9Y6E0 443 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 DNAJC6O75061 913 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 BCRP11274 1271 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 YY1P25490 414 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 AATFQ9NY61 560 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIG3-202ENST00000378526 LRPPRCP42704 1394 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 IDH1O75874 414 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 MAP4P27816 1152 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 ELF1P32519 619 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 MRPS35P82673 323 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 NSMCE1Q8WV22 266 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 MTBPQ96DY7 904 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 GPR101Q96P66 508 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 TRIM31Q9BZY9 425 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 CNNM2Q9H8M5 875 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 SAMM50Q9Y512 469 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 CTNND1O60716 968 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 MTRF1O75570 445 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 GNAQP50148 359 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 ESCO1Q5FWF5 840 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 FANCEQ9HB96 536 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 LZTS1Q9Y250 596 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 PHLPP2Q6ZVD8 1323 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 PASKQ96RG2 1323 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 NUTM2BA6NNL0 878 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 ZNF839A8K0R7 811 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 NUTM2EB1AL46 878 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 GUCY2FP51841 1108 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 PLEKHM3Q6ZWE6 761 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 AHI1Q8N157 1196 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 MRRFQ96E11 262 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 FAM129AQ9BZQ8 928 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 BIN2Q9UBW5 565 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.55□□□□□ -0.88
LIG3-202ENST00000378526 HSPA9P38646 679 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 RECQLP46063 649 aaPredicted RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 KRT23Q9C075 422 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 BICC1Q9H694 974 aaKnown RBP9.55□□□□□ -0.88
LIG3-202ENST00000378526 ARL2BPQ9Y2Y0 163 aa9.55□□□□□ -0.88
LIG3-202ENST00000378526 PSDA5PKW4 1024 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 SLFN14P0C7P3 912 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 HNRNPH2P55795 449 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 DNM1Q05193 864 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 TBC1D8BQ0IIM8 1120 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 HSP90AA4PQ58FG1 418 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 TMTC4Q5T4D3 741 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 GPRASP1Q5JY77 1395 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 GYG2O15488 501 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 EEF1GP26641 437 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 KPNA2P52292 529 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 TRIM71Q2Q1W2 868 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 UBE2OQ9C0C9 1292 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 KLC4Q9NSK0 619 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 TRIM75PA6NK02 468 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 ATN1P54259 1190 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 MRPS25P82663 173 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 NAF1Q96HR8 494 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 ZSCAN32Q9NX65 697 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 CARMIL2Q6F5E8 1435 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 KRIT1O00522 736 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 GPC4O75487 556 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 DMPKQ09013 629 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 ZC3H12BQ5HYM0 836 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 GGT6Q6P531 493 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 RAB44Q7Z6P3 723 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 RTL3Q8N8U3 475 aaKnown RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 MLKLQ8NB16 471 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 SMARCAD1Q9H4L7 1026 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 PRDM2Q13029 1718 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 KLHL7Q8IXQ5 586 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 ANKRD27Q96NW4 1050 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 TRIM33Q9UPN9 1127 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 CALUO43852 315 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 MSH2P43246 934 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 TUBA3CQ13748 450 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 CC2D2BQ6DHV5 1058 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 ZNF483Q8TF39 744 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 SLC26A6Q9BXS9 759 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 CCDC90BQ9GZT6 254 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 MORC2Q9Y6X9 1032 aaPredicted RBP9.54□□□□□ -0.88
LIG3-202ENST00000378526 TRPC7Q9HCX4 862 aa9.54□□□□□ -0.88
LIG3-202ENST00000378526 MINDY4BA8MYZ0 360 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 TRIM16LQ309B1 348 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 MFSD6Q6ZSS7 791 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 TRAF3IP3Q9Y228 551 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms