RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 NEDD1Q8NHV4 660 aa19.97■□□□□ 0.79
HMGN4-201ENST00000377575 SPATC1LQ9H0A9 340 aa19.97■□□□□ 0.79
HMGN4-201ENST00000377575 MTMR4Q9NYA4 1195 aa19.97■□□□□ 0.79
HMGN4-201ENST00000377575 CLIP2Q9UDT6 1046 aa19.97■□□□□ 0.79
HMGN4-201ENST00000377575 SLC15A5A6NIM6 579 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 HSPD1P10809 573 aaKnown RBP19.96■□□□□ 0.79
HMGN4-201ENST00000377575 CAPN2P17655 700 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 TFAP4Q01664 338 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 CTDSPL2Q05D32 466 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 FAM83BQ5T0W9 1011 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 SAMD1Q6SPF0 538 aaPredicted RBP19.96■□□□□ 0.79
HMGN4-201ENST00000377575 SHCBP1Q8NEM2 672 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 TRIB2Q92519 343 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 USP6NLQ92738 828 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 SHISA4Q96DD7 197 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 ATG4CQ96DT6 458 aa19.96■□□□□ 0.79
HMGN4-201ENST00000377575 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.96■□□□□ 0.79
HMGN4-201ENST00000377575 TSPY2A6NKD2 308 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 F5H6K3 240 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 NDUFB10O96000 172 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 PTPREP23469 700 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 KLRC3Q07444 240 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 MAP2K5Q13163 448 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 PLS1Q14651 629 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 FAM47AQ5JRC9 791 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 U2AF1L4Q8WU68 220 aaKnown RBP19.95■□□□□ 0.78
HMGN4-201ENST00000377575 MKL1Q969V6 931 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 MOV10L1Q9BXT6 1211 aaKnown RBP19.95■□□□□ 0.78
HMGN4-201ENST00000377575 PAK6Q9NQU5 681 aaPredicted RBP19.95■□□□□ 0.78
HMGN4-201ENST00000377575 PPP1R9AQ9ULJ8 1098 aa19.95■□□□□ 0.78
HMGN4-201ENST00000377575 FGAP02671 866 aa19.94■□□□□ 0.78
HMGN4-201ENST00000377575 GRB14Q14449 540 aa19.94■□□□□ 0.78
HMGN4-201ENST00000377575 GMCL1P1Q8NEA9 526 aa19.94■□□□□ 0.78
HMGN4-201ENST00000377575 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.94■□□□□ 0.78
HMGN4-201ENST00000377575 RPTORQ8N122 1335 aa19.94■□□□□ 0.78
HMGN4-201ENST00000377575 ORC4O43929 436 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 SGPL1O95470 568 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 ERCC3P19447 782 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 PDE4AP27815 886 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 TTC22Q5TAA0 569 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 CWC27Q6UX04 472 aaKnown RBP19.93■□□□□ 0.78
HMGN4-201ENST00000377575 LRRC47Q8N1G4 583 aaKnown RBP19.93■□□□□ 0.78
HMGN4-201ENST00000377575 SLF1Q9BQI6 1058 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 MROH8Q9H579 483 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 HMX1Q9NP08 348 aaPredicted RBP19.93■□□□□ 0.78
HMGN4-201ENST00000377575 FBXO28Q9NVF7 368 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 ADAMTS5Q9UNA0 930 aa19.93■□□□□ 0.78
HMGN4-201ENST00000377575 ZNFX1Q9P2E3 1918 aaKnown RBP19.93■□□□□ 0.78
HMGN4-201ENST00000377575 FRMPD3Q5JV73 1810 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 VWA5AO00534 786 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 STRNO43815 780 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 RANBP6O60518 1105 aaKnown RBP19.92■□□□□ 0.78
HMGN4-201ENST00000377575 SLC25A27O95847 323 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 PRKAR2AP13861 404 aaKnown RBP19.92■□□□□ 0.78
HMGN4-201ENST00000377575 COPB2P35606 906 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 TMEM132BQ14DG7 1078 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 PRPF38BQ5VTL8 546 aaKnown RBP19.92■□□□□ 0.78
HMGN4-201ENST00000377575 NCAPG2Q86XI2 1143 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 DEFB118Q96PH6 123 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 NUP88Q99567 741 aaPredicted RBP19.92■□□□□ 0.78
HMGN4-201ENST00000377575 TOMM22Q9NS69 142 aa19.92■□□□□ 0.78
HMGN4-201ENST00000377575 PLXNA1Q9UIW2 1896 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 HOXC6P09630 235 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 FGRP09769 529 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 PCP11498 1178 aaKnown RBP19.91■□□□□ 0.78
HMGN4-201ENST00000377575 TRIM32Q13049 653 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 MAP3K21Q5TCX8 1036 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 STX8Q9UNK0 236 aa19.91■□□□□ 0.78
HMGN4-201ENST00000377575 FARP2O94887 1054 aaPredicted RBP19.9■□□□□ 0.78
HMGN4-201ENST00000377575 TFRCP02786 760 aaKnown RBP19.9■□□□□ 0.78
HMGN4-201ENST00000377575 ADORA2AP29274 412 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 CCL14Q16627 93 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 SLFN13Q68D06 897 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 DPP9Q86TI2 863 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 ABRAQ8N0Z2 381 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 PRPF38AQ8NAV1 312 aaKnown RBP19.9■□□□□ 0.78
HMGN4-201ENST00000377575 RNF41Q9H4P4 317 aaPredicted RBP19.9■□□□□ 0.78
HMGN4-201ENST00000377575 SLC5A4Q9NY91 659 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 FEM1BQ9UK73 627 aa19.9■□□□□ 0.78
HMGN4-201ENST00000377575 CTDP1Q9Y5B0 961 aaPredicted RBP19.9■□□□□ 0.78
HMGN4-201ENST00000377575 GSPT1P15170 499 aaKnown RBP19.89■□□□□ 0.77
HMGN4-201ENST00000377575 HAND2P61296 217 aa19.89■□□□□ 0.77
HMGN4-201ENST00000377575 RRP12Q5JTH9 1297 aaKnown RBP19.89■□□□□ 0.77
HMGN4-201ENST00000377575 MFSD14CQ5VZR4 134 aa19.89■□□□□ 0.77
HMGN4-201ENST00000377575 RIOX2Q8IUF8 465 aa19.89■□□□□ 0.77
HMGN4-201ENST00000377575 INCENPQ9NQS7 918 aa19.89■□□□□ 0.77
HMGN4-201ENST00000377575 ISY1Q9ULR0 285 aaKnown RBP19.89■□□□□ 0.77
HMGN4-201ENST00000377575 RAD50Q92878 1312 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 FCER1AP12319 257 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 BMP3P12645 472 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 STAT3P40763 770 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 CACNB2Q08289 660 aaPredicted RBP19.88■□□□□ 0.77
HMGN4-201ENST00000377575 AKNAD1Q5T1N1 836 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 MFSD6Q6ZSS7 791 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 REPS2Q8NFH8 660 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 STAG1Q8WVM7 1258 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 GMCL1Q96IK5 515 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 DSCC1Q9BVC3 393 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 TEX13BQ9BXU2 312 aa19.88■□□□□ 0.77
HMGN4-201ENST00000377575 CRISPLD2Q9H0B8 497 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms