RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 CCDC112Q8NEF3 446 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 FAM163AQ96GL9 167 aaPredicted RBP10.94□□□□□ -0.66
TRIM39-202ENST00000376659 ZFP91Q96JP5 570 aaPredicted RBP10.94□□□□□ -0.66
TRIM39-202ENST00000376659 SETDB2Q96T68 719 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 LEMD3Q9Y2U8 911 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 TEX33O43247 280 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 KANK3Q6NY19 840 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 CCDC24Q8N4L8 307 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 DYNLL2Q96FJ2 89 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 NLRP3Q96P20 1036 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 TRMT1Q9NXH9 659 aaKnown RBP10.94□□□□□ -0.66
TRIM39-202ENST00000376659 LIMA1Q9UHB6 759 aaKnown RBP10.94□□□□□ -0.66
TRIM39-202ENST00000376659 DDX41Q9UJV9 622 aaKnown RBP10.94□□□□□ -0.66
TRIM39-202ENST00000376659 SPATA31A6Q5VVP1 1343 aa10.94□□□□□ -0.66
TRIM39-202ENST00000376659 GPR75-ASB3A0A0A6YYF3 556 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 A0A0U1RQJ8 604 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 NUTM2BA6NNL0 878 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 VGLL3A8MV65 326 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 NUTM2EB1AL46 878 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 RNF225M0QZC1 329 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 CBFA2T2O43439 604 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SFPQP23246 707 aaKnown RBP eCLIP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 NBPF5PQ86XG9 351 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 NUTM2AQ8IVF1 878 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 ATRIPQ8WXE1 791 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SMARCE1Q969G3 411 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 ERO1AQ96HE7 468 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 BMP15O95972 392 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SAFBQ15424 915 aaKnown RBP eCLIP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 PPP4R3BQ5MIZ7 849 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SPATA1Q5VX52 437 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SPECC1LQ69YQ0 1117 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 PANX2Q96RD6 677 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 PCDHA4Q9UN74 947 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 PARP14Q460N5 1801 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SYNRGQ9UMZ2 1314 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 GYPCP04921 128 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 GYS1P13807 737 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 HOXA10P31260 410 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 GABPAQ06546 454 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 BICDL1Q6ZP65 573 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 IQCA1Q86XH1 822 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 SMAP1Q8IYB5 467 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 KIF18AQ8NI77 898 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 UBXN6Q9BZV1 441 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 BARHL2Q9NY43 387 aa10.93□□□□□ -0.66
TRIM39-202ENST00000376659 CCNL1Q9UK58 526 aaPredicted RBP10.93□□□□□ -0.66
TRIM39-202ENST00000376659 KIF2AO00139 706 aaPredicted RBP10.92□□□□□ -0.66
TRIM39-202ENST00000376659 STX10O60499 249 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 TUBB4AP04350 444 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 SNHG28P0DPA3 235 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 FBXO38Q6PIJ6 1188 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 TMEM60Q9H2L4 133 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 USP17L3A6NCW0 530 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 USP17L4A6NCW7 530 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 RASSF10A6NK89 507 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 DIXDC1Q155Q3 683 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 USP17L1Q7RTZ2 530 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 GPR101Q96P66 508 aaPredicted RBP10.92□□□□□ -0.66
TRIM39-202ENST00000376659 SPZ1Q9BXG8 430 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 MRPL44Q9H9J2 332 aaKnown RBP10.92□□□□□ -0.66
TRIM39-202ENST00000376659 PPP2R2CQ9Y2T4 447 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 ARHGAP6O43182 974 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 ETF1P62495 437 aaKnown RBP10.92□□□□□ -0.66
TRIM39-202ENST00000376659 ZNF174Q15697 407 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 COBLL1Q53SF7 1204 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 RAD9BQ6WBX8 426 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 SMYD4Q8IYR2 804 aaPredicted RBP10.92□□□□□ -0.66
TRIM39-202ENST00000376659 PDCL2Q8N4E4 241 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 SLC44A5Q8NCS7 719 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 DHX58Q96C10 678 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 ARID3AQ99856 593 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 ZMYND12Q9H0C1 365 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 KBTBD4Q9NVX7 518 aa10.92□□□□□ -0.66
TRIM39-202ENST00000376659 TADA3O75528 432 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 ZRANB2O95218 330 aaKnown RBP eCLIP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 DDR1Q08345 913 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 GNL2Q13823 731 aaKnown RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 TPTE2Q6XPS3 522 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 WDR24Q96S15 920 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 TTYH3Q9C0H2 523 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 LOC285556D6RIA3 1793 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 ADRA2BP18089 450 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 LONP1P36776 959 aaKnown RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 PRPHP41219 470 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 MTF1Q14872 753 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 RSRC2Q7L4I2 434 aaKnown RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 PNMA1Q8ND90 353 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 ZNF507Q8TCN5 953 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 GPKOWQ92917 476 aaPredicted RBP eCLIP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 TMEM47Q9BQJ4 181 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 MMTAG2Q9BU76 263 aaKnown RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 RWDD2AQ9UIY3 292 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 PMS1P54277 932 aaKnown RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 MAP3K9P80192 1104 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 CHAF1AQ13111 956 aaPredicted RBP10.91□□□□□ -0.66
TRIM39-202ENST00000376659 SYT10Q6XYQ8 523 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 PIK3AP1Q6ZUJ8 805 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 BLIDQ8IZY5 108 aa10.91□□□□□ -0.66
TRIM39-202ENST00000376659 POLLQ9UGP5 575 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms