RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MYO6Q9UM54 1294 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 PRPF3O43395 683 aaKnown RBP18.5■□□□□ 0.55
SDC4-201ENST00000372733 BMP15O95972 392 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 PIP4K2BP78356 416 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 TCP11X2Q5H9J9 407 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 PDXDC2PQ6P474 469 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 RWDD2AQ9UIY3 292 aa18.5■□□□□ 0.55
SDC4-201ENST00000372733 MYO1CO00159 1063 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 IFIT1BQ5T764 474 aaKnown RBP18.49■□□□□ 0.55
SDC4-201ENST00000372733 DZIP3Q86Y13 1208 aaKnown RBP18.49■□□□□ 0.55
SDC4-201ENST00000372733 ZSCAN10Q96SZ4 725 aaPredicted RBP18.49■□□□□ 0.55
SDC4-201ENST00000372733 BRMS1Q9HCU9 246 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 GUCA1BQ9UMX6 200 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 GDAQ9Y2T3 454 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 LRRIQ3A6PVS8 624 aaPredicted RBP18.49■□□□□ 0.55
SDC4-201ENST00000372733 LEKR1Q6ZMV7 388 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 C10orf67Q8IYJ2 551 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 IQUBQ8NA54 791 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 TFR2Q9UP52 801 aa18.49■□□□□ 0.55
SDC4-201ENST00000372733 ADAMTS3O15072 1205 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 IL17AQ16552 155 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 CATIPQ7Z7H3 387 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 MYO1AQ9UBC5 1043 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 HDAC6Q9UBN7 1215 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 ABCF2Q9UG63 623 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 NUP98P52948 1817 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 LRRC10BA6NIK2 292 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 ENC1O14682 589 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 MCM7P33993 719 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 UBXN1Q04323 297 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 SPAG1Q07617 926 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 FOXR1Q6PIV2 292 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 MSL3Q8N5Y2 521 aaKnown RBP18.48■□□□□ 0.55
SDC4-201ENST00000372733 GBP3Q9H0R5 595 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 MYH2Q9UKX2 1941 aa18.48■□□□□ 0.55
SDC4-201ENST00000372733 NHSL1Q5SYE7 1610 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 GTPBP6O43824 516 aaPredicted RBP18.47■□□□□ 0.55
SDC4-201ENST00000372733 NDUFA10O95299 355 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 EVA1CP58658 441 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 TUBB4BP68371 445 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 TRIM14Q14142 442 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 PIK3AP1Q6ZUJ8 805 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 ANKRD20A12PQ8NF67 263 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 RRP15Q9Y3B9 282 aaKnown RBP18.47■□□□□ 0.55
SDC4-201ENST00000372733 TRIM49BA6NDI0 452 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 TROAPQ12815 778 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 HSP90B2PQ58FF3 399 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 BRINP3Q76B58 766 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 SRLQ86TD4 932 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 EPN1Q9Y6I3 576 aaPredicted RBP18.47■□□□□ 0.55
SDC4-201ENST00000372733 CNTNAP5Q8WYK1 1306 aa18.47■□□□□ 0.55
SDC4-201ENST00000372733 DUOX1Q9NRD9 1551 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 MAGEB6P1A0A0J9YX57 407 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 PPP2R5BQ15173 497 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 TMTC3Q6ZXV5 915 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 ZNF34Q8IZ26 560 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 ANAPC4Q9UJX5 808 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 TTC26A0AVF1 554 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 RPN1P04843 607 aaKnown RBP18.46■□□□□ 0.55
SDC4-201ENST00000372733 PRCPP42785 496 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 SUSD4Q5VX71 490 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 FAM71BQ8TC56 605 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 RASSF4Q9H2L5 321 aa18.46■□□□□ 0.55
SDC4-201ENST00000372733 BAZ2BQ9UIF8 2168 aaKnown RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 CICQ96RK0 1608 aaPredicted RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 PES1O00541 588 aaKnown RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 VEGFAP15692 232 aaPredicted RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 DYNLL1P63167 89 aaKnown RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 EVX2Q03828 476 aa18.45■□□□□ 0.54
SDC4-201ENST00000372733 ZNF658Q5TYW1 1059 aaPredicted RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 TRAPPC11Q7Z392 1133 aa18.45■□□□□ 0.54
SDC4-201ENST00000372733 IRF2BP1Q8IU81 584 aa18.45■□□□□ 0.54
SDC4-201ENST00000372733 DISP2A7MBM2 1401 aa18.45■□□□□ 0.54
SDC4-201ENST00000372733 RBM28Q9NW13 759 aaKnown RBP18.45■□□□□ 0.54
SDC4-201ENST00000372733 MYH13Q9UKX3 1938 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 SRGAP2O75044 1071 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 ATP1A1P05023 1023 aaKnown RBP18.44■□□□□ 0.54
SDC4-201ENST00000372733 PARP1P09874 1014 aaKnown RBP18.44■□□□□ 0.54
SDC4-201ENST00000372733 HERVK_113P62684 666 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 WDR93Q6P2C0 686 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 SRBD1Q8N5C6 995 aaKnown RBP18.44■□□□□ 0.54
SDC4-201ENST00000372733 CCDC148Q8NFR7 591 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 NMT2O60551 498 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 TNNT3P45378 269 aaPredicted RBP18.44■□□□□ 0.54
SDC4-201ENST00000372733 MMS19Q96T76 1030 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 FAM204AQ9H8W3 233 aa18.44■□□□□ 0.54
SDC4-201ENST00000372733 ERVV-1B6SEH8 477 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 PMS1P54277 932 aaKnown RBP18.43■□□□□ 0.54
SDC4-201ENST00000372733 NLRP5P59047 1200 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 IQCA1Q86XH1 822 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 CAPZA3Q96KX2 299 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 RIOK1Q9BRS2 568 aaKnown RBP18.43■□□□□ 0.54
SDC4-201ENST00000372733 BAZ2AQ9UIF9 1905 aaKnown RBP18.43■□□□□ 0.54
SDC4-201ENST00000372733 USP14P54578 494 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 ITGB4P16144 1822 aa18.43■□□□□ 0.54
SDC4-201ENST00000372733 COL1A1P02452 1464 aaPredicted RBP18.42■□□□□ 0.54
SDC4-201ENST00000372733 PSMD14O00487 310 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 IVLP07476 585 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 HSPA2P54652 639 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 CHRNDQ07001 517 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms