RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TSC1Q92574 1164 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 HAUS7Q99871 368 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC87Q9NVE4 849 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 RGS12O14924 1447 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 TNS3Q68CZ2 1445 aa12.67□□□□□ -0.38
PTPRF-203ENST00000372407 KRT71Q3SY84 523 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 VSIG1Q86XK7 387 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 OSBPL3Q9H4L5 887 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 PCDHA7Q9UN72 937 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 PTCH1Q13635 1447 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 PPARAQ07869 468 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 TYW1BQ6NUM6 668 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 HAUS4Q9H6D7 363 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 FEZ2Q9UHY8 353 aaPredicted RBP12.66□□□□□ -0.38
PTPRF-203ENST00000372407 THRAP3Q9Y2W1 955 aaKnown RBP12.66□□□□□ -0.38
PTPRF-203ENST00000372407 ERBB3P21860 1342 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 FYB2Q5VWT5 728 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 TTC16Q8NEE8 873 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 MAP4K1Q92918 833 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 FGAP02671 866 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 PHKG2P15735 406 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 PDE6AP16499 860 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 NAA25Q14CX7 972 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 LRRC8AQ8IWT6 810 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 MYCT1Q8N699 235 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 FANCLQ9NW38 375 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 TBC1D7Q9P0N9 293 aa12.66□□□□□ -0.38
PTPRF-203ENST00000372407 BTBD18B2RXH4 712 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 H7C1D1 291 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 ATP11AP98196 1134 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 RAD51AP2Q09MP3 1159 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 COPRSQ9NQ92 184 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 GNA14O95837 355 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 TRPC3Q13507 836 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 NEDD9Q14511 834 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 MAPKAPK5Q8IW41 473 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC105Q8IYK2 499 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 IFNL3Q8IZI9 196 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 TBC1D22AQ8WUA7 517 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 RABEP2Q9H5N1 569 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.38
PTPRF-203ENST00000372407 A0A1W2PQ27 194 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 A0A1W2PQ64 194 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 A0A1W2PQD8 194 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 SMCO2A6NFE2 343 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 EFCAB8A8MWE9 144 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 GCNT3O95395 438 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 STAT1P42224 750 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 PPM1FP49593 454 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-203ENST00000372407 RPS8P62241 208 aaKnown RBP12.65□□□□□ -0.38
PTPRF-203ENST00000372407 FAM182BQ5T319 152 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 RASEFQ8IZ41 740 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 KIFC2Q96AC6 838 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 DESI2Q9BSY9 194 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 ARPP21Q9UBL0 812 aaPredicted RBP12.65□□□□□ -0.38
PTPRF-203ENST00000372407 PPP2R2CQ9Y2T4 447 aa12.65□□□□□ -0.38
PTPRF-203ENST00000372407 KCNJ18B7U540 433 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 GAS8O95995 478 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 SLC8A3P57103 927 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 STRN3Q13033 797 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 KCNJ12Q14500 433 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 GPIHBP1Q8IV16 184 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 FLAD1Q8NFF5 587 aa12.65□□□□□ -0.39
PTPRF-203ENST00000372407 MRPL44Q9H9J2 332 aaKnown RBP12.65□□□□□ -0.39
PTPRF-203ENST00000372407 ADAMTS13Q76LX8 1427 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 AATKQ6ZMQ8 1374 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 ERBB4Q15303 1308 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 PSDA5PKW4 1024 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-203ENST00000372407 E7EVH7 732 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 KCNQ3O43525 872 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 PPFIA4O75335 1185 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 DCUN1D2Q6PH85 259 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 BLIDQ8IZY5 108 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 KDRP35968 1356 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 TCP1P17987 556 aaKnown RBP12.64□□□□□ -0.39
PTPRF-203ENST00000372407 ZSCAN26Q16670 478 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 FAM47AQ5JRC9 791 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 SPATA1Q5VX52 437 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 PNMA8AQ86V59 439 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-203ENST00000372407 SMC1BQ8NDV3 1235 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 RAB17Q9H0T7 212 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 ATP8A2Q9NTI2 1148 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 IRX5P78411 483 aaPredicted RBP12.64□□□□□ -0.39
PTPRF-203ENST00000372407 PPP2R5EQ16537 467 aa12.64□□□□□ -0.39
PTPRF-203ENST00000372407 ZMYM6O95789 1325 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CIB2O75838 187 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 ZNF827Q17R98 1081 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 MYOCDQ8IZQ8 938 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 GDAP1L1Q96MZ0 367 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 LSG1Q9H089 658 aaKnown RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 PCDHB13Q9Y5F0 798 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 TNKSO95271 1327 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 PDIA3P30101 505 aaKnown RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 MORC3Q14149 939 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CACNA2D3Q8IZS8 1091 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 TGFBRAP1Q8WUH2 860 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 MAIP1Q8WWC4 291 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 VTI1AQ96AJ9 217 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 AMFRQ9UKV5 643 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 PCDHA5Q9Y5H7 936 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms