RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 VAMP4O75379 141 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 OR8K1Q8NGG5 319 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 PPP2R5AQ15172 486 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ANKRD20A4Q4UJ75 823 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ANKRD20A8PQ5CZ79 823 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ANKRD20A2Q5SQ80 823 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 NBPF14Q5TI25 921 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ANKRD20A1Q5TYW2 823 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 GPIHBP1Q8IV16 184 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ADGRF5Q8IZF2 1346 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 SYCP2Q9BX26 1530 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 KCNJ18B7U540 433 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 M0QZ92 97 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ATF7P17544 494 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-208ENST00000367256 PEX19P40855 299 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 ATP1A2P50993 1020 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 KCNJ12Q14500 433 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 AZI2Q9H6S1 392 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 PARP3Q9Y6F1 533 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 RGS12O14924 1447 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 MAGEA1P43355 309 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 LCA5Q86VQ0 697 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 SKA2Q8WVK7 121 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-208ENST00000367256 EYA3Q99504 573 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 FANCAO15360 1455 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 DKC1O60832 514 aaKnown RBP eCLIP8.02□□□□□ -1.13
SYNE1-208ENST00000367256 SUN1O94901 812 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 RRAGAQ7L523 313 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 FAM207AQ9NSI2 230 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-208ENST00000367256 CD109Q6YHK3 1445 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 KDM3AQ9Y4C1 1321 aa8.02□□□□□ -1.13
SYNE1-208ENST00000367256 SART1O43290 800 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 AKAP4Q5JQC9 854 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 A0A087WUV0 522 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 MYCLP12524 364 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 IPO11Q9UI26 975 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PLCH2O75038 1416 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PFDN6O15212 129 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 CLTAP09496 248 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PNOCQ13519 176 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 KRT25Q7Z3Z0 450 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 GPHNQ9NQX3 736 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 SLC27A2O14975 620 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 CD19P15391 556 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 SEPT2Q15019 361 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 ADALQ6DHV7 355 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 U2AF1L4Q8WU68 220 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 ACSBG1Q96GR2 724 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 SCHIP1Q9P0W5 487 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 DNM3Q9UQ16 869 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 GINS2Q9Y248 185 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 GOLGA8CPA6NN73 597 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PUM3Q15397 648 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 TEX11Q8IYF3 940 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 HDAC11Q96DB2 347 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 KDRP35968 1356 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 IRS4O14654 1257 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 IFNB1P01574 187 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 ATF2P15336 505 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 DNM2P50570 870 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 TSC1Q92574 1164 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 ACTR5Q9H9F9 607 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 NCOA5Q9HCD5 579 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 DENND2AQ9ULE3 1009 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 NPATQ14207 1427 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 TTC4O95801 387 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 OATP04181 439 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 USH1GQ495M9 461 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 RPAINQ86UA6 219 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 CFAP61Q8NHU2 1237 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 KIAA1468Q9P260 1216 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PCDH11XQ9BZA7 1347 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PCDH11YQ9BZA8 1340 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 CCDC151A5D8V7 595 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 B4E1Z4 1266 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 APOEP02649 317 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 EIF6P56537 245 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 SNX29Q8TEQ0 813 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 XRCC5P13010 732 aaKnown RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 ZNF277Q9NRM2 450 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-208ENST00000367256 RNF14Q9UBS8 474 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 PASKQ96RG2 1323 aa8.01□□□□□ -1.13
SYNE1-208ENST00000367256 DEUP1Q05D60 604 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 MAEAQ7L5Y9 396 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 DZIP3Q86Y13 1208 aaKnown RBP8□□□□□ -1.13
SYNE1-208ENST00000367256 MED10Q9BTT4 135 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 BZW2Q9Y6E2 419 aaKnown RBP8□□□□□ -1.13
SYNE1-208ENST00000367256 N4BP1O75113 896 aaKnown RBP8□□□□□ -1.13
SYNE1-208ENST00000367256 ACEP12821 1306 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 TNNI1P19237 187 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 ITKQ08881 620 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 ZCRB1Q8TBF4 217 aaKnown RBP8□□□□□ -1.13
SYNE1-208ENST00000367256 IWS1Q96ST2 819 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 TXLNGQ9NUQ3 528 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 FAM170AA1A519 330 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 TUBB6Q9BUF5 446 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 ESYT2A0FGR8 921 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 TXKP42681 527 aa8□□□□□ -1.13
SYNE1-208ENST00000367256 KRT28Q7Z3Y7 464 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 227.3 ms