RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CCNA1P78396 465 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 NEK8Q86SG6 692 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 NELFCDQ8IXH7 590 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 STAMQ92783 540 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 AMNQ9BXJ7 453 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 FOSP01100 380 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-204ENST00000367248 AP5M1Q9H0R1 490 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 PIH1D3Q9NQM4 214 aaKnown RBP12.91□□□□□ -0.34
SYNE1-204ENST00000367248 CDC42BPGQ6DT37 1551 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 CRB1P82279 1406 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 USP17L3A6NCW0 530 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 USP17L4A6NCW7 530 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 USP17L1Q7RTZ2 530 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 MCF2L2Q86YR7 1114 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 PUS7LQ9H0K6 701 aaKnown RBP12.91□□□□□ -0.34
SYNE1-204ENST00000367248 MTMR6Q9Y217 621 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 CDHR2Q9BYE9 1310 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 CALUO43852 315 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-204ENST00000367248 MYZAPP0CAP1 466 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 SLC16A2P36021 539 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 VPS16Q9H269 839 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 KCNG1Q9UIX4 513 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 NFE2L3Q9Y4A8 694 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 CLTCL1P53675 1640 aa12.91□□□□□ -0.34
SYNE1-204ENST00000367248 EXOC3O60645 756 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-204ENST00000367248 SELENOOQ9BVL4 669 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 DEFB132Q7Z7B7 95 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 FBXO18Q8NFZ0 1043 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 PNPLA6Q8IY17 1366 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 ADALQ6DHV7 355 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 GUCA1BQ9UMX6 200 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 PTCH1Q13635 1447 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 RASA3Q14644 834 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 POSTNQ15063 836 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 ARHGEF1Q92888 912 aaKnown RBP12.9□□□□□ -0.34
SYNE1-204ENST00000367248 JAKMIP2Q96AA8 810 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 IGSF22Q8N9C0 903 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 SERTAD1Q9UHV2 236 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 SYNRGQ9UMZ2 1314 aa12.9□□□□□ -0.34
SYNE1-204ENST00000367248 STK25O00506 426 aa12.9□□□□□ -0.35
SYNE1-204ENST00000367248 CD19P15391 556 aa12.9□□□□□ -0.35
SYNE1-204ENST00000367248 M0R2C6 588 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 ZBTB24O43167 697 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 SNAP25P60880 206 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 CGNQ9P2M7 1197 aaKnown RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 VWA3BQ502W6 1294 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 SLC27A3Q5K4L6 730 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 GOLGA1Q92805 767 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 PRIMPOLQ96LW4 560 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 TTLL3Q9Y4R7 772 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 GCNT3O95395 438 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 ABI1Q8IZP0 508 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 AKR1B15C9JRZ8 316 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 GADD45BO75293 160 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 SKIV2LQ15477 1246 aaKnown RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 DEPTORQ8TB45 409 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 LRRC45Q96CN5 670 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 TSNARE1Q96NA8 513 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 ISCA1Q9BUE6 129 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 SETD1BQ9UPS6 1966 aaKnown RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 STX10O60499 249 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 OR52Z1P0C646 297 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 CCDC91Q7Z6B0 441 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 RGS12O14924 1447 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 USP17L8P0C7I0 530 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 ASPRV1Q53RT3 343 aa12.89□□□□□ -0.35
SYNE1-204ENST00000367248 RNF26Q9BY78 433 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-204ENST00000367248 PALM3A6NDB9 673 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 SNAP23O00161 211 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 USP14P54578 494 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 CDAN1Q8IWY9 1227 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 LZTFL1Q9NQ48 299 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 ABCA9Q8IUA7 1624 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 FSD2A1L4K1 749 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 PFKFB1P16118 471 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 NLRP12P59046 1061 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 TRIM14Q14142 442 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 GRIPAP1Q4V328 841 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 TBC1D9BQ66K14 1250 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 IKBKGQ9Y6K9 419 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 DAPK3O43293 454 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 PRPF6O94906 941 aaKnown RBP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 FANCCQ00597 558 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 CELF1Q92879 486 aaKnown RBP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 KDM3AQ9Y4C1 1321 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 TTLL1O95922 423 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 VPS72Q15906 364 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 XKR9Q5GH70 373 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 SYNE4Q8N205 404 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 MICAL1Q8TDZ2 1067 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 PLA2G4DQ86XP0 818 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 ZNF710Q8N1W2 664 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 BLZF1Q9H2G9 400 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 MRPL44Q9H9J2 332 aaKnown RBP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 GPBP1L1Q9HC44 474 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-204ENST00000367248 PCDHA12Q9UN75 941 aa12.88□□□□□ -0.35
SYNE1-204ENST00000367248 ATP6V0A2Q9Y487 856 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms