RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PFKFB3Q16875 520 aaPredicted RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 SLFN13Q68D06 897 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 SULF1Q8IWU6 871 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 ARHGEF10LQ9HCE6 1279 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 GPCPD1Q9NPB8 672 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 VPS54Q9P1Q0 977 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 RBM27Q9P2N5 1060 aaKnown RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 ZNF112Q9UJU3 913 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 TMX2Q9Y320 296 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 KIF28PB7ZC32 967 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 RAD21O60216 631 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 CTNND1O60716 968 aaKnown RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 NDUFB10O96000 172 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 SCG2P13521 617 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 KIF23Q02241 960 aaPredicted RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 GPATCH4Q5T3I0 446 aaKnown RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 KCTD1Q719H9 257 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 ZC3H15Q8WU90 426 aaKnown RBP21.52■■□□□ 1.04
CLN3-206ENST00000360019 DCAF4Q8WV16 495 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 KCNJ14Q9UNX9 436 aa21.52■■□□□ 1.04
CLN3-206ENST00000360019 TCHHQ07283 1943 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 DDX11L8A8MPP1 907 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 SLC1A4P43007 532 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 CCDC96Q2M329 555 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 SUPT20HL1Q3ZLR7 823 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 TTBK2Q6IQ55 1244 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 GLIS2Q9BZE0 524 aaPredicted RBP21.51■■□□□ 1.03
CLN3-206ENST00000360019 RIOX1Q9H6W3 641 aa21.51■■□□□ 1.03
CLN3-206ENST00000360019 MMP1P03956 469 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 KRT26Q7Z3Y9 468 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 GMCL1Q96IK5 515 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 WRNIP1Q96S55 665 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 GINM1Q9NU53 330 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 CNPY2Q9Y2B0 182 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 KIAA1755Q5JYT7 1200 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 GDPD2Q9HCC8 539 aa21.5■■□□□ 1.03
CLN3-206ENST00000360019 GOLGA6L22H0YM25 854 aa21.49■■□□□ 1.03
CLN3-206ENST00000360019 EAPPQ56P03 285 aaPredicted RBP21.49■■□□□ 1.03
CLN3-206ENST00000360019 ZKSCAN4Q969J2 545 aaPredicted RBP21.49■■□□□ 1.03
CLN3-206ENST00000360019 KLRG1Q96E93 195 aa21.49■■□□□ 1.03
CLN3-206ENST00000360019 NUP88Q99567 741 aaPredicted RBP21.49■■□□□ 1.03
CLN3-206ENST00000360019 VAT1LQ9HCJ6 419 aa21.49■■□□□ 1.03
CLN3-206ENST00000360019 XBP1P17861 261 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 SLC16A2P36021 539 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 HOMER1Q86YM7 354 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 SCYL3Q8IZE3 742 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 SPICE1Q8N0Z3 855 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 GPKOWQ92917 476 aaPredicted RBP eCLIP21.48■■□□□ 1.03
CLN3-206ENST00000360019 PIGSQ96S52 555 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 PHF20Q9BVI0 1012 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 DOCK1Q14185 1865 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 NCLP19338 710 aaKnown RBP21.48■■□□□ 1.03
CLN3-206ENST00000360019 USP48Q86UV5 1035 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 DIS3L2Q8IYB7 885 aaKnown RBP21.48■■□□□ 1.03
CLN3-206ENST00000360019 ADGRF4Q8IZF3 695 aa21.48■■□□□ 1.03
CLN3-206ENST00000360019 RRP36Q96EU6 259 aaKnown RBP21.48■■□□□ 1.03
CLN3-206ENST00000360019 U2AF2P26368 475 aaKnown RBP eCLIP21.47■■□□□ 1.03
CLN3-206ENST00000360019 WWC2Q6AWC2 1192 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 TYW1BQ6NUM6 668 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 PNMA8AQ86V59 439 aaPredicted RBP21.47■■□□□ 1.03
CLN3-206ENST00000360019 VCPKMTQ9H867 229 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 JMJD4Q9H9V9 463 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 GOPCQ9HD26 462 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 LMBRD1Q9NUN5 540 aa21.47■■□□□ 1.03
CLN3-206ENST00000360019 ISY1Q9ULR0 285 aaKnown RBP21.47■■□□□ 1.03
CLN3-206ENST00000360019 BTBD18B2RXH4 712 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 USP2O75604 605 aaPredicted RBP21.46■■□□□ 1.03
CLN3-206ENST00000360019 BMP3P12645 472 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 KRT85P78386 507 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 PRKG1Q13976 671 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 NPY5RQ15761 445 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 ZYXQ15942 572 aaKnown RBP21.46■■□□□ 1.03
CLN3-206ENST00000360019 BRAPQ7Z569 592 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.46■■□□□ 1.03
CLN3-206ENST00000360019 OXER1Q8TDS5 423 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 SH2D4AQ9H788 454 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 MYH15Q9Y2K3 1946 aa21.46■■□□□ 1.03
CLN3-206ENST00000360019 FIBPO43427 364 aa21.45■■□□□ 1.03
CLN3-206ENST00000360019 PRPF40AO75400 957 aaKnown RBP21.45■■□□□ 1.03
CLN3-206ENST00000360019 POTEIP0CG38 1075 aa21.45■■□□□ 1.03
CLN3-206ENST00000360019 POTEJP0CG39 1038 aa21.45■■□□□ 1.03
CLN3-206ENST00000360019 SAFBQ15424 915 aaKnown RBP eCLIP21.45■■□□□ 1.03
CLN3-206ENST00000360019 HEATR3Q7Z4Q2 680 aa21.45■■□□□ 1.03
CLN3-206ENST00000360019 BARHL2Q9NY43 387 aa21.45■■□□□ 1.03
CLN3-206ENST00000360019 SEC63Q9UGP8 760 aaKnown RBP21.45■■□□□ 1.03
CLN3-206ENST00000360019 STXBP3O00186 592 aa21.45■■□□□ 1.02
CLN3-206ENST00000360019 TMEM87AQ8NBN3 555 aa21.45■■□□□ 1.02
CLN3-206ENST00000360019 CDCA5Q96FF9 252 aa21.45■■□□□ 1.02
CLN3-206ENST00000360019 FOXP1Q9H334 677 aaPredicted RBP21.45■■□□□ 1.02
CLN3-206ENST00000360019 SH3GLB2Q9NR46 395 aa21.45■■□□□ 1.02
CLN3-206ENST00000360019 TFIP11Q9UBB9 837 aaKnown RBP21.45■■□□□ 1.02
CLN3-206ENST00000360019 USP17L10C9JJH3 530 aa21.44■■□□□ 1.02
CLN3-206ENST00000360019 NR5A1Q13285 461 aa21.44■■□□□ 1.02
CLN3-206ENST00000360019 GNL2Q13823 731 aaKnown RBP21.44■■□□□ 1.02
CLN3-206ENST00000360019 MYSM1Q5VVJ2 828 aa21.44■■□□□ 1.02
CLN3-206ENST00000360019 MTMR8Q96EF0 704 aa21.44■■□□□ 1.02
CLN3-206ENST00000360019 TMEM232C9JQI7 657 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 PTPRAP18433 802 aa21.43■■□□□ 1.02
CLN3-206ENST00000360019 NOL9Q5SY16 702 aaKnown RBP21.43■■□□□ 1.02
CLN3-206ENST00000360019 NOSTRINQ8IVI9 506 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms