RNA–Protein interactions for RNA: ENST00000359005.8

TRAPPC4-201, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2 BASIC

Gene TRAPPC4, Length 849 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-201ENST00000359005 CCDC85CA6NKD9 419 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 PRPF3O43395 683 aaKnown RBP12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 TOP1P11387 765 aaKnown RBP12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 TCP10Q12799 353 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 VGLL4Q14135 290 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 NTRK3Q16288 839 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 ZNF296Q8WUU4 475 aaPredicted RBP12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 ANP32BQ92688 251 aaKnown RBP12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 MS4A4AQ96JQ5 239 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 PI4KBQ9UBF8 816 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 CNPY2Q9Y2B0 182 aa12.41□□□□□ -0.42
TRAPPC4-201ENST00000359005 COL2A1P02458 1487 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 HTTP42858 3142 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 DDX60LQ5H9U9 1706 aaKnown RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CASP8AP2Q9UKL3 1982 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 GPR25O00155 361 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CYP2D6P10635 497 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 FDPSP14324 419 aaKnown RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 SMARCA1P28370 1054 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CDC27P30260 824 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 IREB2P48200 963 aaKnown RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 MAP3K9P80192 1104 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 TROAPQ12815 778 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 TNFAIP1Q13829 316 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 SF3A1Q15459 793 aaKnown RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 FOXD4L6Q3SYB3 417 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 FAM47AQ5JRC9 791 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 FKBP1CQ5VVH2 108 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 FOXD4L3Q6VB84 417 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 SH3BP5LQ7L8J4 393 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 IFNL1Q8IU54 200 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CCDC144CPQ8IYA2 1237 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 REM2Q8IYK8 340 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 ANKRD13AQ8IZ07 590 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 PNMA1Q8ND90 353 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 KCNG4Q8TDN1 519 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CCDC12Q8WUD4 166 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 ZKSCAN4Q969J2 545 aaPredicted RBP12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 STX8Q9UNK0 236 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CEP131Q9UPN4 1083 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 PLIN4Q96Q06 1357 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 CDK5RAP2Q96SN8 1893 aa12.4□□□□□ -0.42
TRAPPC4-201ENST00000359005 WDHD1O75717 1129 aaPredicted RBP12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 RASA1P20936 1047 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 CALML3P27482 149 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 TNNI2P48788 182 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 PLCD1P51178 756 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 CCDC183Q5T5S1 534 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 KRT40Q6A162 431 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 CAVIN1Q6NZI2 390 aaKnown RBP12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 TMTC3Q6ZXV5 915 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 FAM83AQ86UY5 434 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 ZSCAN29Q8IWY8 852 aaPredicted RBP12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 BRI3BPQ8WY22 251 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 OPTNQ96CV9 577 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 GZF1Q9H116 711 aaPredicted RBP12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 FOXP1Q9H334 677 aaPredicted RBP12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 SH3GLB2Q9NR46 395 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 SNCAIPQ9Y6H5 919 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 ECM29Q5VYK3 1845 aa12.39□□□□□ -0.43
TRAPPC4-201ENST00000359005 TESPA1A2RU30 521 aaPredicted RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 hCG_1984214I3L0E3 225 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 YEATS4O95619 227 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 BMP15O95972 392 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 ZBTB48P10074 688 aaPredicted RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 RXRAP19793 462 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 INPP5BP32019 993 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 DEKP35659 375 aaKnown RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 MRE11P49959 708 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 STK38Q15208 465 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 RILPL1Q5EBL4 403 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 GALNT17Q6IS24 598 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 ZNF713Q8N859 430 aaPredicted RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 CCDC148Q8NFR7 591 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 FAM151AQ8WW52 585 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 PHKBQ93100 1093 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 DYNLL2Q96FJ2 89 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 MYL10Q9BUA6 226 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 DDX4Q9NQI0 724 aaKnown RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 POLR3EQ9NVU0 708 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 RTEL1Q9NZ71 1219 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 HERC5Q9UII4 1024 aaKnown RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 RCOR1Q9UKL0 485 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 NOL7Q9UMY1 257 aaKnown RBP12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 TACC3Q9Y6A5 838 aa12.38□□□□□ -0.43
TRAPPC4-201ENST00000359005 CENPFP49454 3210 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 MANSC4A6NHS7 340 aaPredicted RBP12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 UNCXA6NJT0 531 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 TTLL1O95922 423 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 MMP1P03956 469 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 PARP1P09874 1014 aaKnown RBP12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 U2AF2P26368 475 aaKnown RBP eCLIP12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 ZNF445P59923 1031 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 GABPAQ06546 454 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 SREBF2Q12772 1141 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 GRM4Q14833 912 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 ASPRV1Q53RT3 343 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 CCDC73Q6ZRK6 1079 aa12.37□□□□□ -0.43
TRAPPC4-201ENST00000359005 RAB11FIP4Q86YS3 637 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms