RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PRAMEF18Q5VWM3 479 aa10.55□□□□□ -0.72
UPF2-202ENST00000357604 WDR33Q9C0J8 1336 aaKnown RBP10.55□□□□□ -0.72
UPF2-202ENST00000357604 CTCFP49711 727 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 HSP90AA2PQ14568 343 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 KRT25Q7Z3Z0 450 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 SAMD3Q8N6K7 520 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 RIOK1Q9BRS2 568 aaKnown RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 ZCCHC17Q9NP64 241 aaKnown RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 PRKAG2Q9UGJ0 569 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 NRXN2Q9P2S2 1712 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 KRT18P05783 430 aaKnown RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 TPM4P67936 248 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 SOCS4Q8WXH5 440 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 HSPA6P17066 643 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 VGLL4Q14135 290 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 ZKSCAN4Q969J2 545 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 ZNF274Q96GC6 653 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 BACH2Q9BYV9 841 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 LRRC27Q9C0I9 530 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 ACAD9Q9H845 621 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 BMP2KQ9NSY1 1161 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 FAM13BQ9NYF5 915 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 TUBGCP6Q96RT7 1819 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 TCRBV5S4A2TA0A5A2 114 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 KLRF2D3W0D1 207 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 PDHXO00330 501 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 CNGA1P29973 690 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 APOBRQ0VD83 1088 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 ZNF589Q86UQ0 364 aaPredicted RBP10.54□□□□□ -0.72
UPF2-202ENST00000357604 CCDC83Q8IWF9 413 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 CDHR1Q96JP9 859 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 SCLT1Q96NL6 688 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 HOMER2Q9NSB8 354 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 AKR1B1P15121 316 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 USH1GQ495M9 461 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 ALG1Q9BT22 464 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 KIAA1683Q9H0B3 1180 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 FOXD4L1Q9NU39 408 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 AGTPBP1Q9UPW5 1226 aa10.54□□□□□ -0.72
UPF2-202ENST00000357604 KIF23Q02241 960 aaPredicted RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 GIMAP8Q8ND71 665 aaPredicted RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 NUDT12Q9BQG2 462 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 MROH8Q9H579 483 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 FAM198AQ9UFP1 575 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 NOP56O00567 594 aaKnown RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 APBB1IPQ7Z5R6 666 aaPredicted RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 DHX37Q8IY37 1157 aaKnown RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 SPICE1Q8N0Z3 855 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 PNMA6FA0A0J9YX94 578 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 TRAF5O00463 557 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 RBM25P49756 843 aaKnown RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 STK38Q15208 465 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 HHIPL1Q96JK4 782 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 WDR18Q9BV38 432 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 CFAP45Q9UL16 551 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 SH2B2O14492 632 aaPredicted RBP10.53□□□□□ -0.72
UPF2-202ENST00000357604 LIFRP42702 1097 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 GRM4Q14833 912 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 SPRYD7Q5W111 196 aa10.53□□□□□ -0.72
UPF2-202ENST00000357604 PTH1RQ03431 593 aa10.52□□□□□ -0.72
UPF2-202ENST00000357604 KCNV1Q6PIU1 500 aa10.52□□□□□ -0.72
UPF2-202ENST00000357604 MTMR4Q9NYA4 1195 aa10.52□□□□□ -0.72
UPF2-202ENST00000357604 SPDYE5A6NIY4 337 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 TPM2P07951 284 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 CDC37Q16543 378 aaPredicted RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 SNRNP48Q6IEG0 339 aaKnown RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 KCTD1Q719H9 257 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 PLEKHH3Q7Z736 793 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 FAM177A1Q8N128 213 aaPredicted RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 CCDC82Q8N4S0 544 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 CEP95Q96GE4 821 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 NOD1Q9Y239 953 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 CYP2D7A0A087X1C5 515 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 KLRG1Q96E93 195 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 TRERF1Q96PN7 1200 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 AZI2Q9H6S1 392 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 MYCLP12524 364 aaPredicted RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 STAT3P40763 770 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 NFIAQ12857 509 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 L1TD1Q5T7N2 865 aaKnown RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 FANCBQ8NB91 859 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 GMLQ99445 158 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 MAP3K14Q99558 947 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 UPF3BQ9BZI7 483 aaKnown RBP10.52□□□□□ -0.73
UPF2-202ENST00000357604 MAF1Q9H063 256 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 SH3GLB2Q9NR46 395 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 SAMM50Q9Y512 469 aa10.52□□□□□ -0.73
UPF2-202ENST00000357604 OAZ1P54368 228 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 PSTPIP2Q9H939 334 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 DDTLA6NHG4 134 aaPredicted RBP10.51□□□□□ -0.73
UPF2-202ENST00000357604 FAM196BA6NMK8 535 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 GOLGA6L6A8MZA4 724 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 CFBP00751 764 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 PTPRAP18433 802 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 MAP3K20Q9NYL2 800 aaKnown RBP10.51□□□□□ -0.73
UPF2-202ENST00000357604 F5H6K3 240 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 USP2O75604 605 aaPredicted RBP10.51□□□□□ -0.73
UPF2-202ENST00000357604 KLRC3Q07444 240 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 TMEM47Q9BQJ4 181 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 LRRC2Q9BYS8 371 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms