RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TTBK2Q6IQ55 1244 aa22.14■■□□□ 1.14
CHMP4A-201ENST00000347519 KCTD1Q719H9 257 aa22.14■■□□□ 1.14
CHMP4A-201ENST00000347519 SRBD1Q8N5C6 995 aaKnown RBP22.14■■□□□ 1.14
CHMP4A-201ENST00000347519 CTCFLQ8NI51 663 aaPredicted RBP22.14■■□□□ 1.14
CHMP4A-201ENST00000347519 OPTNQ96CV9 577 aa22.14■■□□□ 1.14
CHMP4A-201ENST00000347519 BAZ2BQ9UIF8 2168 aaKnown RBP22.14■■□□□ 1.13
CHMP4A-201ENST00000347519 PARP1P09874 1014 aaKnown RBP22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 PPATQ06203 517 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 FUT2Q10981 343 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 TMTC3Q6ZXV5 915 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 DCAF4Q8WV16 495 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 SLC10A4Q96EP9 437 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 GMCL1Q96IK5 515 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 SH2D4AQ9H788 454 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 GOPCQ9HD26 462 aa22.13■■□□□ 1.13
CHMP4A-201ENST00000347519 UNCXA6NJT0 531 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 IRF6O14896 467 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 CCDC96Q2M329 555 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 CCDC82Q8N4S0 544 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 PHKBQ93100 1093 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 RBM28Q9NW13 759 aaKnown RBP22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 MYH6P13533 1939 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 SLC1A4P43007 532 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 HMGCS2P54868 508 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 HUNKP57058 714 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 PPIL2Q13356 520 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 FAM83BQ5T0W9 1011 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 SMARCC2Q8TAQ2 1214 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 UBA5Q9GZZ9 404 aa22.12■■□□□ 1.13
CHMP4A-201ENST00000347519 LOC285556D6RIA3 1793 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 PTPDC1A2A3K4 754 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 KLRF2D3W0D1 207 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 CYTH3O43739 400 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 BMP3P12645 472 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 IFNAR1P17181 557 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 KIF5BP33176 963 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 ASPRV1Q53RT3 343 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 DDX11Q96FC9 970 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 INTS4Q96HW7 963 aaKnown RBP22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 WNK4Q96J92 1243 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 KCNH4Q9UQ05 1017 aa22.11■■□□□ 1.13
CHMP4A-201ENST00000347519 CNTNAP5Q8WYK1 1306 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 CPLX1O14810 134 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 FDPSP14324 419 aaKnown RBP22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 SLC16A2P36021 539 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 HTRA3P83110 453 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 PPP2R5BQ15173 497 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 SH3D19Q5HYK7 790 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 SAPCD2Q86UD0 394 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 C12orf42Q96LP6 360 aa22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 LLPHQ9BRT6 129 aaKnown RBP22.1■■□□□ 1.13
CHMP4A-201ENST00000347519 PARP14Q460N5 1801 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 CCDC196A0A1B0GTZ2 297 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 hCG_1642624A0A1W2PR95 340 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 C19orf81C9J6K1 198 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 VCAM1P19320 739 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 USP14P54578 494 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 MKRN3Q13064 507 aaKnown RBP22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 DNAJC5GQ8N7S2 189 aa22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 ISY1Q9ULR0 285 aaKnown RBP22.09■■□□□ 1.13
CHMP4A-201ENST00000347519 RLFQ13129 1914 aa22.08■■□□□ 1.13
CHMP4A-201ENST00000347519 A0A0G2JLL6 359 aaPredicted RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 TMEM232C9JQI7 657 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 CXCL11O14625 94 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 DHX16O60231 1041 aaKnown RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 HSP90AA1P07900 732 aaKnown RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 GJB2P29033 226 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 GNAQP50148 359 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 MOGSQ13724 837 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 GPATCH4Q5T3I0 446 aaKnown RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 PRRT2Q7Z6L0 340 aaPredicted RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 PIBF1Q8WXW3 757 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 LPAR1Q92633 364 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 SLC26A6Q9BXS9 759 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 FBXO28Q9NVF7 368 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 SMC3Q9UQE7 1217 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 TLL2Q9Y6L7 1015 aa22.08■■□□□ 1.12
CHMP4A-201ENST00000347519 TMEM88BA6NKF7 163 aa22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 WDR46O15213 610 aaKnown RBP22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 FMNL1O95466 1100 aaPredicted RBP22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 RPAP3Q9H6T3 665 aaPredicted RBP22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 VAT1LQ9HCJ6 419 aa22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 DAXXQ9UER7 740 aaPredicted RBP22.07■■□□□ 1.12
CHMP4A-201ENST00000347519 TREML2Q5T2D2 321 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 SPRYD7Q5W111 196 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 CPLX2Q6PUV4 134 aaKnown RBP22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 BTNL9Q6UXG8 535 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 RASAL3Q86YV0 1011 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 AIFM3Q96NN9 605 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 LZTS2Q9BRK4 669 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 SPZ1Q9BXG8 430 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 RIOX1Q9H6W3 641 aa22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 ORC3Q9UBD5 711 aaPredicted RBP22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 V9GY48 417 aaPredicted RBP22.06■■□□□ 1.12
CHMP4A-201ENST00000347519 CDKL5O76039 1030 aa22.05■■□□□ 1.12
CHMP4A-201ENST00000347519 SSRP1Q08945 709 aaKnown RBP22.05■■□□□ 1.12
CHMP4A-201ENST00000347519 GADL1Q6ZQY3 521 aa22.05■■□□□ 1.12
CHMP4A-201ENST00000347519 ADGRF4Q8IZF3 695 aa22.05■■□□□ 1.12
CHMP4A-201ENST00000347519 JMJD4Q9H9V9 463 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms