RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TTF1Q15361 905 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 EGFL6Q8IUX8 553 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 SHISA4Q96DD7 197 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 SH3GL2Q99962 352 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 IDEP14735 1019 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 KLK7P49862 253 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 SEC24CP53992 1094 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 RNF187Q5TA31 235 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 KANK3Q6NY19 840 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 GBP6Q6ZN66 633 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 GDAQ9Y2T3 454 aa15.09■□□□□ 0.01
CCDC88C-201ENST00000331194 LMO7Q8WWI1 1683 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 FMNL1O95466 1100 aaPredicted RBP15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 RILPL1Q5EBL4 403 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 TCP11X2Q5H9J9 407 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 CABS1Q96KC9 395 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 ZBTB3Q9H5J0 574 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 AGPAT5Q9NUQ2 364 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 FAM184BQ9ULE4 1060 aa15.08■□□□□ 0.01
CCDC88C-201ENST00000331194 ITIH6Q6UXX5 1313 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 TARSL2A2RTX5 802 aaKnown RBP15.08■□□□□ 0
CCDC88C-201ENST00000331194 H7C1W4 665 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 PRDM1O75626 825 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 IDH1O75874 414 aaKnown RBP15.08■□□□□ 0
CCDC88C-201ENST00000331194 SATB1Q01826 763 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 NUP133Q8WUM0 1156 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 HAUS4Q9H6D7 363 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 SLC52A2Q9HAB3 445 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 AFDNP55196 1824 aaKnown RBP15.08■□□□□ 0
CCDC88C-201ENST00000331194 MST1RQ04912 1400 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 ZNF174Q15697 407 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 KRT26Q7Z3Y9 468 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 POTEDQ86YR6 584 aa15.08■□□□□ 0
CCDC88C-201ENST00000331194 ZKSCAN4Q969J2 545 aaPredicted RBP15.08■□□□□ 0
CCDC88C-201ENST00000331194 LIMA1Q9UHB6 759 aaKnown RBP15.08■□□□□ 0
CCDC88C-201ENST00000331194 MYH10P35580 1976 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 C5P01031 1676 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 ZNF142P52746 1687 aaPredicted RBP15.07■□□□□ 0
CCDC88C-201ENST00000331194 A0A0G2JS52 829 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 GPTP24298 496 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 MCM3P25205 808 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 SH3RF1Q7Z6J0 888 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 OR8K1Q8NGG5 319 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 NELFBQ8WX92 580 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 MTRQ99707 1265 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 GPR108Q9NPR9 543 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 ECM29Q5VYK3 1845 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 CCDC196A0A1B0GTZ2 297 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 SSBP05455 408 aaKnown RBP eCLIP15.07■□□□□ 0
CCDC88C-201ENST00000331194 PRDM11Q9NQV5 511 aa15.07■□□□□ 0
CCDC88C-201ENST00000331194 BAZ2BQ9UIF8 2168 aaKnown RBP15.07■□□□□ 0
CCDC88C-201ENST00000331194 XDHP47989 1333 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 MCAMP43121 646 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 KIRREL3Q8IZU9 778 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 ZNF579Q8NAF0 562 aaKnown RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 RNPC3Q96LT9 517 aaKnown RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 LUC7L2Q9Y383 392 aaKnown RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 KIAA0754O94854 1291 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 IRF2BP1Q8IU81 584 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 LRRC10BA6NIK2 292 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 MEFVO15553 781 aaPredicted RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 ZFYP08048 801 aaPredicted RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 SNRPA1P09661 255 aaKnown RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 USP8P40818 1118 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 PMS1P54277 932 aaKnown RBP15.06■□□□□ 0
CCDC88C-201ENST00000331194 CREG2Q8IUH2 290 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 ZIM3Q96PE6 472 aa15.06■□□□□ 0
CCDC88C-201ENST00000331194 MYH13Q9UKX3 1938 aa15.05■□□□□ 0
CCDC88C-201ENST00000331194 STRCP1A6NGW2 1772 aa15.05■□□□□ 0
CCDC88C-201ENST00000331194 ESYT3A0FGR9 886 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 ZSCAN5CA6NGD5 496 aaPredicted RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 ZPR1O75312 459 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 PLEKP08567 350 aaPredicted RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 IFNAR1P17181 557 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 RAPGEF4Q8WZA2 1011 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 GSDMAQ96QA5 445 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 FRMD3A2A2Y4 597 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 NBPF26B4DH59 902 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 CKAP4Q07065 602 aaKnown RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 IFT88Q13099 833 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 NNTQ13423 1086 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 NBPF10Q6P3W6 841 aaKnown RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 NBPF15Q8N660 670 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 PLBD2Q8NHP8 589 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 FOXP1Q9H334 677 aaPredicted RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 MLXIPQ9HAP2 919 aa15.05■□□□□ -0
CCDC88C-201ENST00000331194 PIH1D3Q9NQM4 214 aaKnown RBP15.05■□□□□ -0
CCDC88C-201ENST00000331194 KAT6BQ8WYB5 2073 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 NKRFO15226 690 aaKnown RBP eCLIP15.04■□□□□ -0
CCDC88C-201ENST00000331194 FAM153BP0C7A2 387 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 PRCPP42785 496 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 SETQ01105 290 aaPredicted RBP15.04■□□□□ -0
CCDC88C-201ENST00000331194 PAK1Q13153 545 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 TCIRG1Q13488 830 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 FAM153CQ494X1 144 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 NFRKBQ6P4R8 1299 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 TTC5Q8N0Z6 440 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 GIMAP7Q8NHV1 300 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 CWC25Q9NXE8 425 aaPredicted RBP15.04■□□□□ -0
CCDC88C-201ENST00000331194 FAM153AQ9UHL3 310 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms