RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 IL1R1P14778 569 aa9.02□□□□□ -0.96
CNOT4-201ENST00000315544 FXR1P51114 621 aaKnown RBP eCLIP9.02□□□□□ -0.96
CNOT4-201ENST00000315544 TXNRD3Q86VQ6 643 aa9.02□□□□□ -0.96
CNOT4-201ENST00000315544 CFHR5Q9BXR6 569 aa9.02□□□□□ -0.96
CNOT4-201ENST00000315544 FANCLQ9NW38 375 aa9.02□□□□□ -0.96
CNOT4-201ENST00000315544 BSDC1Q9NW68 430 aaPredicted RBP9.02□□□□□ -0.96
CNOT4-201ENST00000315544 STX10O60499 249 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 KIF20AO95235 890 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 SPIRE1Q08AE8 756 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 NR5A1Q13285 461 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 GRAPQ13588 217 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 MUM1L1Q5H9M0 696 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 PAPD7Q5XG87 772 aaKnown RBP9.02□□□□□ -0.97
CNOT4-201ENST00000315544 WDR93Q6P2C0 686 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 TRAPPC11Q7Z392 1133 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 IGSF22Q8N9C0 903 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 GRAPLQ8TC17 118 aaPredicted RBP9.02□□□□□ -0.97
CNOT4-201ENST00000315544 FAM163AQ96GL9 167 aaPredicted RBP9.02□□□□□ -0.97
CNOT4-201ENST00000315544 PNKPQ96T60 521 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 MRIQ9BWK5 157 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 LTBP2Q14767 1821 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 ATP8B1O43520 1251 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 TFRCP02786 760 aaKnown RBP9.02□□□□□ -0.97
CNOT4-201ENST00000315544 MARSP56192 900 aaKnown RBP9.02□□□□□ -0.97
CNOT4-201ENST00000315544 RHBDL3P58872 404 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 PHKBQ93100 1093 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 BORCS6Q96GS4 357 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 ZBTB3Q9H5J0 574 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 ZNF652Q9Y2D9 606 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 SIK3Q9Y2K2 1263 aa9.02□□□□□ -0.97
CNOT4-201ENST00000315544 KLF18A0A0U1RQI7 1052 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 TP73O15350 636 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 SYF2O95926 243 aaKnown RBP9.01□□□□□ -0.97
CNOT4-201ENST00000315544 PCP11498 1178 aaKnown RBP9.01□□□□□ -0.97
CNOT4-201ENST00000315544 POLD1P28340 1107 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 HOXD13P35453 343 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 NT5C2P49902 561 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 PPP4CP60510 307 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 PPP4R3BQ5MIZ7 849 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 TTC5Q8N0Z6 440 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 PIK3R5Q8WYR1 880 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 HHIPL1Q96JK4 782 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 AKAP2Q9Y2D5 859 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.01□□□□□ -0.977e-7■□□□□ 9.6
CNOT4-201ENST00000315544 RALGAPA2Q2PPJ7 1873 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 BTBD18B2RXH4 712 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 SKILP12757 684 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 HGSNATQ68CP4 663 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 FSIP1Q8NA03 581 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 RBM46Q8TBY0 533 aaKnown RBP9.01□□□□□ -0.97
CNOT4-201ENST00000315544 MSNP26038 577 aaKnown RBP9.01□□□□□ -0.97
CNOT4-201ENST00000315544 RFC4P35249 363 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 PLCD1P51178 756 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 MAP3K10Q02779 954 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 CC2D1AQ6P1N0 951 aaPredicted RBP9.01□□□□□ -0.97
CNOT4-201ENST00000315544 ANO10Q9NW15 660 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 MINPP1Q9UNW1 487 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 GRIN2DO15399 1336 aa9.01□□□□□ -0.97
CNOT4-201ENST00000315544 FOXD4L6Q3SYB3 417 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 FIGNQ5HY92 759 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 FOXD4L3Q6VB84 417 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 CSRNP2Q9H175 543 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 IQSEC3Q9UPP2 1182 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 PITPNM2Q9BZ72 1349 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 VPS37CA5D8V6 355 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 B4E1Z4 1266 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 PPP1R11O60927 126 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 NOL4O94818 638 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 PLEKHA8P1O95397 391 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 NEXNQ0ZGT2 675 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 CCDC142Q17RM4 750 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 B3GNT9Q6UX72 402 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 MPNDQ8N594 471 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 SEC14L1Q92503 715 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 STRA6Q9BX79 667 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 SAMSN1Q9NSI8 373 aaKnown RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 PIM2Q9P1W9 311 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 ATF5Q9Y2D1 282 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 PSMD14O00487 310 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 PFKFB3Q16875 520 aaPredicted RBP9□□□□□ -0.97
CNOT4-201ENST00000315544 SIAH1Q8IUQ4 282 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 PAGR1Q9BTK6 254 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 SH3GLB2Q9NR46 395 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 SALL4Q9UJQ4 1053 aa9□□□□□ -0.97
CNOT4-201ENST00000315544 TNFRSF8P28908 595 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 GSDMDP57764 484 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 ITIH3Q06033 890 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 KCNB1Q14721 858 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 ADSSL1Q8N142 457 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 BAP1Q92560 729 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 IRS4O14654 1257 aaPredicted RBP8.99□□□□□ -0.97
CNOT4-201ENST00000315544 GOLGA8FQ08AF8 430 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 GOLGA8DPQ0D2H9 430 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 PPP4R3CPQ6ZMV5 832 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 FANCBQ8NB91 859 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 TXLNGYQ9BZA5 131 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 TMEM51Q9NW97 253 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 IFNKQ9P0W0 207 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 PPP2R2CQ9Y2T4 447 aa8.99□□□□□ -0.97
CNOT4-201ENST00000315544 MFAP3LO75121 409 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms