RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 SLFN13Q68D06 897 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 TTBK2Q6IQ55 1244 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CCDC144CPQ8IYA2 1237 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 PTPN18Q99952 460 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CPVLQ9H3G5 476 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 ZBTB43O43298 467 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 PLEKHA8P1O95397 391 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 ZBTB48P10074 688 aaPredicted RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 VCAM1P19320 739 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CCT2P78371 535 aaKnown RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 MKRN3Q13064 507 aaKnown RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 STK3Q13188 491 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CUL4AQ13619 759 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 TREML2Q5T2D2 321 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 NFXL1Q6ZNB6 911 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 KCTD1Q719H9 257 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CATIPQ7Z7H3 387 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 MICU3Q86XE3 530 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 CMTR1Q8N1G2 835 aaKnown RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 SRBD1Q8N5C6 995 aaKnown RBP11.09□□□□□ -0.63
RFX3-201ENST00000302303 BRI3BPQ8WY22 251 aa11.09□□□□□ -0.63
RFX3-201ENST00000302303 RLFQ13129 1914 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 FRMPD2Q68DX3 1309 aaPredicted RBP11.08□□□□□ -0.64
RFX3-201ENST00000302303 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 MCM2P49736 904 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 FGD1P98174 961 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 FAM83BQ5T0W9 1011 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 CYP4F22Q6NT55 531 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 BTNL9Q6UXG8 535 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 NUP133Q8WUM0 1156 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 DCAF4Q8WV16 495 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 LPAR1Q92633 364 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 GTF3C6Q969F1 213 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 FBXO28Q9NVF7 368 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 ABT1Q9ULW3 272 aaKnown RBP11.08□□□□□ -0.64
RFX3-201ENST00000302303 MTMR7Q9Y216 660 aa11.08□□□□□ -0.64
RFX3-201ENST00000302303 LOC285556D6RIA3 1793 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 PCNTO95613 3336 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 KLRF2D3W0D1 207 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 K7ELQ4 463 aaPredicted RBP11.07□□□□□ -0.64
RFX3-201ENST00000302303 PLA2G6O60733 806 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 CALM1P0DP23 149 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 CALM2P0DP24 149 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 CALM3P0DP25 149 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 BMP3P12645 472 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 HOXA7P31268 230 aaPredicted RBP11.07□□□□□ -0.64
RFX3-201ENST00000302303 METAP2P50579 478 aaKnown RBP eCLIP11.07□□□□□ -0.64
RFX3-201ENST00000302303 USP14P54578 494 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 CATSPERGQ6ZRH7 1159 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 TMTC3Q6ZXV5 915 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 PROCA1Q8NCQ7 364 aaPredicted RBP11.07□□□□□ -0.64
RFX3-201ENST00000302303 MTMR8Q96EF0 704 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 ZSCAN31Q96LW9 406 aaPredicted RBP11.07□□□□□ -0.64
RFX3-201ENST00000302303 FEZ1Q99689 392 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 UBA5Q9GZZ9 404 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 RPAP3Q9H6T3 665 aaPredicted RBP11.07□□□□□ -0.64
RFX3-201ENST00000302303 RIOX1Q9H6W3 641 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 SH2D4AQ9H788 454 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 GOPCQ9HD26 462 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 GPCPD1Q9NPB8 672 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 CEP350Q5VT06 3117 aa11.07□□□□□ -0.64
RFX3-201ENST00000302303 GOLGA8AA7E2F4 631 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 BTBD19C9JJ37 291 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 WDR46O15213 610 aaKnown RBP11.06□□□□□ -0.64
RFX3-201ENST00000302303 FDPSP14324 419 aaKnown RBP11.06□□□□□ -0.64
RFX3-201ENST00000302303 SLC16A2P36021 539 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 SLC1A4P43007 532 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 C1QTNF8P60827 252 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 SNAPC2Q13487 334 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 RTN1Q16799 776 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 DEFB115Q30KQ5 88 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 ASPRV1Q53RT3 343 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 CCDC83Q8IWF9 413 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 CCDC102AQ96A19 550 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 SHISA4Q96DD7 197 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 SLKQ9H2G2 1235 aaPredicted RBP11.06□□□□□ -0.64
RFX3-201ENST00000302303 SH2B1Q9NRF2 756 aaPredicted RBP11.06□□□□□ -0.64
RFX3-201ENST00000302303 ADAMTS5Q9UNA0 930 aa11.06□□□□□ -0.64
RFX3-201ENST00000302303 TMEM232C9JQI7 657 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 IGF2BP3O00425 579 aaKnown RBP eCLIP11.05□□□□□ -0.64
RFX3-201ENST00000302303 PPFIA3O75145 1194 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 PARP1P09874 1014 aaKnown RBP11.05□□□□□ -0.64
RFX3-201ENST00000302303 IFNAR1P17181 557 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 SMARCA1P28370 1054 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 GTF2A2P52657 109 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 PPP2R5BQ15173 497 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 PKN1Q16512 942 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 GPATCH4Q5T3I0 446 aaKnown RBP11.05□□□□□ -0.64
RFX3-201ENST00000302303 FAM43AQ8N2R8 423 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 NSUN7Q8NE18 718 aaKnown RBP11.05□□□□□ -0.64
RFX3-201ENST00000302303 SMARCC2Q8TAQ2 1214 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 JMJD4Q9H9V9 463 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 AGTPBP1Q9UPW5 1226 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 PARP14Q460N5 1801 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 CNTNAP5Q8WYK1 1306 aa11.05□□□□□ -0.64
RFX3-201ENST00000302303 CCL15-CCL14A0A0B4J2E2 113 aa11.04□□□□□ -0.64
RFX3-201ENST00000302303 RAD21O60216 631 aa11.04□□□□□ -0.64
RFX3-201ENST00000302303 JAK2O60674 1132 aa11.04□□□□□ -0.64
RFX3-201ENST00000302303 PPP1R11O60927 126 aaPredicted RBP11.04□□□□□ -0.64
RFX3-201ENST00000302303 AOC2O75106 756 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms