RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 ZNF862O60290 1169 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 NFICP08651 508 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 GJA8P48165 433 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 CEBPAP49715 358 aaPredicted RBP5.81□□□□□ -1.48
CD44-202ENST00000278385 ZNF252P-AS1Q0IIN9 211 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 SAFB2Q14151 953 aaKnown RBP eCLIP5.81□□□□□ -1.48
CD44-202ENST00000278385 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.81□□□□□ -1.48
CD44-202ENST00000278385 FBXL6Q8N531 539 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 TBC1D32Q96NH3 1257 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 SFMBT1Q9UHJ3 866 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 PPP1R9AQ9ULJ8 1098 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 PCDHGB7Q9Y5F8 929 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 BCORL1Q5H9F3 1711 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 RTEL1-TNFRSF6BF6WH68 1400 aa5.81□□□□□ -1.48
CD44-202ENST00000278385 HECW2Q9P2P5 1572 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 AGLP35573 1532 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 EHBP1L1Q8N3D4 1523 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 FANCGO15287 622 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 LDHAP00338 332 aaKnown RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 NEFMP07197 916 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 GNALP38405 381 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 VPS72Q15906 364 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 CYP27C1Q4G0S4 372 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 ZC3H12AQ5D1E8 599 aaKnown RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 ARSHQ5FYA8 562 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 CDPF1Q6NVV7 123 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 GGT6Q6P531 493 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 AGMOQ6ZNB7 445 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 ARHGAP27Q6ZUM4 889 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 RNF214Q8ND24 703 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 STK35Q8TDR2 534 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 JARID2Q92833 1246 aaPredicted RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 ZNF512BQ96KM6 892 aaPredicted RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 FANCD2OSQ96PS1 177 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 CEP89Q96ST8 783 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 NAP1L4Q99733 375 aaKnown RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 FAM105AQ9NUU6 356 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 GGT7Q9UJ14 662 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 CSADQ9Y600 493 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 SNCAIPQ9Y6H5 919 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 PREX2Q70Z35 1606 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 CNTLNQ9NXG0 1405 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 REREQ9P2R6 1566 aa5.8□□□□□ -1.48
CD44-202ENST00000278385 DHX29Q7Z478 1369 aaKnown RBP5.8□□□□□ -1.48
CD44-202ENST00000278385 MAP3K1Q13233 1512 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 NCOA2Q15596 1464 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 LRRC9Q6ZRR7 1453 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 MBD5Q9P267 1494 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 MADDQ8WXG6 1647 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 PRAMEF27A3QJZ7 478 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 CFAP69A5D8W1 941 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 DCDC2CA8MYV0 355 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 WDR64B1ANS9 1081 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 IFRD1O00458 451 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 PLIN1O60240 522 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ZNF500O60304 480 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 CDC45O75419 566 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 HSP90AA1P07900 732 aaKnown RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 HCLS1P14317 486 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 HSPA2P54652 639 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ETF1P62495 437 aaKnown RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 PDE4BQ07343 736 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 HDAC1Q13547 482 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 TTLL4Q14679 1199 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 CPSF6Q16630 551 aaKnown RBP eCLIP5.79□□□□□ -1.48
CD44-202ENST00000278385 SNAP47Q5SQN1 464 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ZMYM1Q5SVZ6 1142 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ZNF280DQ6N043 979 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 USP48Q86UV5 1035 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 SAMD3Q8N6K7 520 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ZNF507Q8TCN5 953 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 EZH1Q92800 747 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 WDR89Q96FK6 387 aaPredicted RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 MFSD14AQ96MC6 490 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 SRPK1Q96SB4 655 aaKnown RBP5.79□□□□□ -1.48
CD44-202ENST00000278385 RSRP1Q9BUV0 290 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 LGR6Q9HBX8 967 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 HOMER2Q9NSB8 354 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 SIRPGQ9P1W8 387 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 LEMD3Q9Y2U8 911 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 LRRIQ1Q96JM4 1722 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 CDC42BPBQ9Y5S2 1711 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 ZMYM3Q14202 1370 aa5.79□□□□□ -1.48
CD44-202ENST00000278385 A2MP01023 1474 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 LMTK3Q96Q04 1460 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 CAND2O75155 1236 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 FGAP02671 866 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 CTSHP09668 335 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 CD53P19397 219 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 CHMP4BP1P59074 171 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 POU5F1BQ06416 359 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 ZRSR2Q15696 482 aaKnown RBP5.78□□□□□ -1.48
CD44-202ENST00000278385 PPM1JQ5JR12 505 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 INTS5Q6P9B9 1019 aaKnown RBP5.78□□□□□ -1.48
CD44-202ENST00000278385 KIAA0907Q7Z7F0 614 aaPredicted RBP5.78□□□□□ -1.48
CD44-202ENST00000278385 CCDC84Q86UT8 332 aaPredicted RBP5.78□□□□□ -1.48
CD44-202ENST00000278385 C12orf40Q86WS4 652 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 SAMD9LQ8IVG5 1584 aa5.78□□□□□ -1.48
CD44-202ENST00000278385 TSR2Q969E8 191 aaKnown RBP5.78□□□□□ -1.48
CD44-202ENST00000278385 TMEM74Q96NL1 305 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms