RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RIOX1Q9H6W3 641 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 VPS54Q9P1Q0 977 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 RCOR1Q9UKL0 485 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 GADD45BO75293 160 aaPredicted RBP16.27■□□□□ 0.2
SS18-201ENST00000269137 CAP2P40123 477 aa16.27■□□□□ 0.2
SS18-201ENST00000269137 GNL2Q13823 731 aaKnown RBP16.27■□□□□ 0.2
SS18-201ENST00000269137 NOSTRINQ8IVI9 506 aa16.27■□□□□ 0.2
SS18-201ENST00000269137 USP28Q96RU2 1077 aa16.27■□□□□ 0.2
SS18-201ENST00000269137 RTEL1Q9NZ71 1219 aa16.27■□□□□ 0.2
SS18-201ENST00000269137 ZBTB21Q9ULJ3 1066 aa16.27■□□□□ 0.2
SS18-201ENST00000269137 PHF20L1A8MW92 1017 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 BTBD18B2RXH4 712 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 HIRAP54198 1017 aaPredicted RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 ANGEL2Q5VTE6 544 aaKnown RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 GINM1Q9NU53 330 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 POLR3EQ9NVU0 708 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 ZC3H4Q9UPT8 1303 aaKnown RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 GRIN3BO60391 1043 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 LMOD1P29536 600 aaPredicted RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 SLFN13Q68D06 897 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 HOOK2Q96ED9 719 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 RRP36Q96EU6 259 aaKnown RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 GMCL1Q96IK5 515 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 ADARB2Q9NS39 739 aaKnown RBP16.26■□□□□ 0.19
SS18-201ENST00000269137 PPP2R3BQ9Y5P8 575 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 PITPNM2Q9BZ72 1349 aa16.26■□□□□ 0.19
SS18-201ENST00000269137 F5H6K3 240 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 ASNSP08243 561 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 VEGFAP15692 232 aaPredicted RBP16.25■□□□□ 0.19
SS18-201ENST00000269137 CALML3P27482 149 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 KRT2P35908 639 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 NASPP49321 788 aaPredicted RBP16.25■□□□□ 0.19
SS18-201ENST00000269137 KLRC3Q07444 240 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 NPY5RQ15761 445 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 GPR162Q16538 588 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 PIBF1Q8WXW3 757 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 ARHGEF10LQ9HCE6 1279 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 BRMS1Q9HCU9 246 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 BARHL2Q9NY43 387 aa16.25■□□□□ 0.19
SS18-201ENST00000269137 SCAF8Q9UPN6 1271 aaKnown RBP16.25■□□□□ 0.19
SS18-201ENST00000269137 FRMPD2Q68DX3 1309 aaPredicted RBP16.25■□□□□ 0.19
SS18-201ENST00000269137 YEATS4O95619 227 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 GALNT17Q6IS24 598 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 DPY19L2Q6NUT2 758 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 L3MBTL3Q96JM7 780 aaPredicted RBP16.24■□□□□ 0.19
SS18-201ENST00000269137 UBA5Q9GZZ9 404 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 CPVLQ9H3G5 476 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 GPCPD1Q9NPB8 672 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 TMX2Q9Y320 296 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 A0A1W2PRG0 241 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 hCG_1984214I3L0E3 225 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 SLC1A4P43007 532 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 NLRP5P59047 1200 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 GSE1Q14687 1217 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 CCDC96Q2M329 555 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 NBPF12Q5TAG4 269 aaPredicted RBP16.24■□□□□ 0.19
SS18-201ENST00000269137 DCAF15Q66K64 600 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 WWC2Q6AWC2 1192 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 ZNF713Q8N859 430 aaPredicted RBP16.24■□□□□ 0.19
SS18-201ENST00000269137 CCDC148Q8NFR7 591 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 OXER1Q8TDS5 423 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 FTOQ9C0B1 505 aaKnown RBP eCLIP16.24■□□□□ 0.19
SS18-201ENST00000269137 GGA3Q9NZ52 723 aa16.24■□□□□ 0.19
SS18-201ENST00000269137 SEC63Q9UGP8 760 aaKnown RBP16.24■□□□□ 0.19
SS18-201ENST00000269137 STXBP3O00186 592 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 CTNND1O60716 968 aaKnown RBP16.23■□□□□ 0.19
SS18-201ENST00000269137 NDUFB10O96000 172 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 NR5A1Q13285 461 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 RILPL1Q5EBL4 403 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 ANO1Q5XXA6 986 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 LINC00301Q8NCQ3 95 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 GPKOWQ92917 476 aaPredicted RBP eCLIP16.23■□□□□ 0.19
SS18-201ENST00000269137 TNFRSF25Q93038 417 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 MTMR8Q96EF0 704 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 PIGSQ96S52 555 aa16.23■□□□□ 0.19
SS18-201ENST00000269137 CEBPZQ03701 1054 aaKnown RBP16.22■□□□□ 0.19
SS18-201ENST00000269137 TTBK2Q6IQ55 1244 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 KCTD1Q719H9 257 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 DAGLBQ8NCG7 672 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 KCNG4Q8TDN1 519 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 CCDC12Q8WUD4 166 aaPredicted RBP16.22■□□□□ 0.19
SS18-201ENST00000269137 SH2D4AQ9H788 454 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 JMJD4Q9H9V9 463 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 VAT1LQ9HCJ6 419 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 ZNF112Q9UJU3 913 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 CLIC4Q9Y696 253 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 TYW1BQ6NUM6 668 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 CAVIN1Q6NZI2 390 aaKnown RBP16.22■□□□□ 0.19
SS18-201ENST00000269137 HEATR3Q7Z4Q2 680 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 ADGRF4Q8IZF3 695 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 ACER1Q8TDN7 264 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 PGBD1Q96JS3 809 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 ZNF341Q9BYN7 854 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 PCDHA4Q9UN74 947 aa16.22■□□□□ 0.19
SS18-201ENST00000269137 POLR2AP24928 1970 aaKnown RBP16.21■□□□□ 0.19
SS18-201ENST00000269137 PNMA6FA0A0J9YX94 578 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 GOLGA6L4A6NEF3 574 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 BMP3P12645 472 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 SLC39A14Q15043 492 aa16.21■□□□□ 0.19
SS18-201ENST00000269137 STK38Q15208 465 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms