RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 AGTPBP1Q9UPW5 1226 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 PPP6R2O75170 966 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 TCP1P17987 556 aaKnown RBP11.91□□□□□ -0.5
CD44-201ENST00000263398 CDC25BP30305 580 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 APOA5Q6Q788 366 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 TAOK1Q7L7X3 1001 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 GSDMAQ96QA5 445 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 STAT1P42224 750 aa11.91□□□□□ -0.5
CD44-201ENST00000263398 RSRC1Q96IZ7 334 aaKnown RBP11.91□□□□□ -0.5
CD44-201ENST00000263398 IKBKBO14920 756 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 DDAH1O94760 285 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 OR52Z1P0C646 297 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 PTGDRQ13258 359 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 KRT71Q3SY84 523 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 DPP8Q6V1X1 898 aaPredicted RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 ZNF354CQ86Y25 554 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 GPIHBP1Q8IV16 184 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 TLR7Q9NYK1 1049 aaKnown RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 FEZ2Q9UHY8 353 aaPredicted RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 HYOU1Q9Y4L1 999 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 XRCC5P13010 732 aaKnown RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 BCAMP50895 628 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 STRN3Q13033 797 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 MCTP2Q6DN12 878 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 NEK8Q86SG6 692 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 BIN2Q9UBW5 565 aaPredicted RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 EPN1Q9Y6I3 576 aaPredicted RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 IQGAP3Q86VI3 1631 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 CFBP00751 764 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 LONP1P36776 959 aaKnown RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 GYG1P46976 350 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 ZNF589Q86UQ0 364 aaPredicted RBP11.9□□□□□ -0.5
CD44-201ENST00000263398 PSMD1Q99460 953 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 RAB17Q9H0T7 212 aa11.9□□□□□ -0.5
CD44-201ENST00000263398 KLRF2D3W0D1 207 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PPP2R5EQ16537 467 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 ZSCAN26Q16670 478 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 CCDC105Q8IYK2 499 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 FOXP1Q9H334 677 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 FAM204AQ9H8W3 233 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PCDHA12Q9UN75 941 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PCDHB13Q9Y5F0 798 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PRR36Q9H6K5 1346 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 CARMIL3Q8ND23 1372 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 ARL1P40616 181 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 PHKA1P46020 1223 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 TRPC3Q13507 836 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 TMEM87AQ8NBN3 555 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 RNF26Q9BY78 433 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 HECW2Q9P2P5 1572 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 ARMCX3Q9UH62 379 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 AMFRQ9UKV5 643 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 ROBO2Q9HCK4 1378 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PPFIA4O75335 1185 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 UAP1Q16222 522 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 MFSD14BQ5SR56 506 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 APBB1IPQ7Z5R6 666 aaPredicted RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 CCDC24Q8N4L8 307 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 CCDC110Q8TBZ0 833 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 RABGGTAQ92696 567 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 GDAP1L1Q96MZ0 367 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 NRBP1Q9UHY1 535 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 MAP3K15Q6ZN16 1313 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 RPN1P04843 607 aaKnown RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 TRAPPC10P48553 1259 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 USH1GQ495M9 461 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 MAEAQ7L5Y9 396 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 MAIP1Q8WWC4 291 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 IWS1Q96ST2 819 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 PUS3Q9BZE2 481 aaKnown RBP11.89□□□□□ -0.51
CD44-201ENST00000263398 CROCC2H7BZ55 1655 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 ABCC3O15438 1527 aa11.89□□□□□ -0.51
CD44-201ENST00000263398 GAS8O95995 478 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 TECP42680 631 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 DPCR1Q3MIW9 517 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 CFAP157Q5JU67 520 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 FYB2Q5VWT5 728 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 ARHGEF25Q86VW2 580 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 LINC00301Q8NCQ3 95 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 CACTINQ8WUQ7 758 aaKnown RBP11.88□□□□□ -0.51
CD44-201ENST00000263398 SYMPKQ92797 1274 aaKnown RBP11.88□□□□□ -0.51
CD44-201ENST00000263398 LSM14BQ9BX40 385 aaKnown RBP11.88□□□□□ -0.51
CD44-201ENST00000263398 RABEP2Q9H5N1 569 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 A0A1B0GUA9 196 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 MAP7D1Q3KQU3 841 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 GPBP1Q86WP2 473 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 STMN2Q93045 179 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 GREM2Q9H772 168 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 SLAIN2Q9P270 581 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 KCNG1Q9UIX4 513 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 KIF1BO60333 1816 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 ADORA1P30542 326 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 ZYXQ15942 572 aaKnown RBP11.88□□□□□ -0.51
CD44-201ENST00000263398 DCUN1D2Q6PH85 259 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 PLCB1Q9NQ66 1216 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 PARP2Q9UGN5 583 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 CDC23Q9UJX2 597 aa11.88□□□□□ -0.51
CD44-201ENST00000263398 NDC80O14777 642 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 MYCLP12524 364 aaPredicted RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 VSIG1Q86XK7 387 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms