RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PALM3A6NDB9 673 aaPredicted RBP21.13■□□□□ 0.97
UPF1-201ENST00000262803 TFAP4Q01664 338 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 RAB3IPQ96QF0 476 aaPredicted RBP21.13■□□□□ 0.97
UPF1-201ENST00000262803 DDAH1O94760 285 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 EXOC8Q8IYI6 725 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 HAUS1Q96CS2 278 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 ZNF408Q9H9D4 720 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 STAP2Q9UGK3 403 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 APBA3O96018 575 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 PPP1R21Q6ZMI0 780 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 ZNF277Q9NRM2 450 aaPredicted RBP21.13■□□□□ 0.97
UPF1-201ENST00000262803 FAM114A2Q9NRY5 505 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 USH1CQ9Y6N9 552 aa21.13■□□□□ 0.97
UPF1-201ENST00000262803 MAGI3Q5TCQ9 1506 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 ZNF500O60304 480 aaPredicted RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 GCNT3O95395 438 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 FOSP01100 380 aaPredicted RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 ERCC3P19447 782 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 ADPGKQ9BRR6 497 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 ADKP55263 362 aaKnown RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 NOSTRINQ8IVI9 506 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 JPH2Q9BR39 696 aaPredicted RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 SAMD9Q5K651 1589 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 ADD1P35611 737 aaKnown RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 FAM98CQ17RN3 349 aaKnown RBP21.12■□□□□ 0.97
UPF1-201ENST00000262803 WWC3Q9ULE0 1092 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 FAM135BQ49AJ0 1406 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 TMEM2Q9UHN6 1383 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 CFBP00751 764 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 PAK2Q13177 524 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 BCL2L12Q9HB09 334 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 PFDN4Q9NQP4 134 aa21.12■□□□□ 0.97
UPF1-201ENST00000262803 ZNF521Q96K83 1311 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 GPIHBP1Q8IV16 184 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 NLGN1Q8N2Q7 840 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.11■□□□□ 0.971e-6■□□□□ 9.6
UPF1-201ENST00000262803 GABPB1Q06547 395 aaPredicted RBP21.11■□□□□ 0.97
UPF1-201ENST00000262803 KLHL30Q0D2K2 578 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 BIRC2Q13490 618 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 PPP1R2P3Q6NXS1 205 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 ATP2A3Q93084 1043 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 TNNC2P02585 160 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 POLR2MP0CAP2 368 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 LRMPQ12912 555 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 FAM47AQ5JRC9 791 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 MAPKAPK5Q8IW41 473 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 LSG1Q9H089 658 aaKnown RBP21.11■□□□□ 0.97
UPF1-201ENST00000262803 NDUFAB1O14561 156 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 FAM160B1Q5W0V3 765 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 TGFBRAP1Q8WUH2 860 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 PSMB7Q99436 277 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 RAB17Q9H0T7 212 aa21.11■□□□□ 0.97
UPF1-201ENST00000262803 GOLGA8CPA6NN73 597 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 GRK7Q8WTQ7 553 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 ATP10DQ9P241 1426 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 XPOTO43592 962 aaKnown RBP21.1■□□□□ 0.97
UPF1-201ENST00000262803 CD19P15391 556 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 RASEFQ8IZ41 740 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 I3L4J1 428 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 PCCAP05165 728 aaPredicted RBP21.1■□□□□ 0.97
UPF1-201ENST00000262803 GABPAQ06546 454 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 MLXIPQ9HAP2 919 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 MYOM2P54296 1465 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 CFAP221Q4G0U5 840 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 SND1Q7KZF4 910 aaKnown RBP eCLIP21.1■□□□□ 0.97
UPF1-201ENST00000262803 METTL14Q9HCE5 456 aaKnown RBP21.1■□□□□ 0.97
UPF1-201ENST00000262803 TBC1D7Q9P0N9 293 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 RABGAP1Q9Y3P9 1069 aa21.1■□□□□ 0.97
UPF1-201ENST00000262803 CMA1P23946 247 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 YARSP54577 528 aaKnown RBP21.09■□□□□ 0.97
UPF1-201ENST00000262803 CCNA1P78396 465 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 ARHGEF16Q5VV41 709 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 TRIML1Q8N9V2 468 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 GLG1Q92896 1179 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 CCDC17Q96LX7 622 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 RASSF4Q9H2L5 321 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 OSBPL3Q9H4L5 887 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 AOC3Q16853 763 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 IFNL3Q8IZI9 196 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 CACNA2D3Q8IZS8 1091 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 NRBP2Q9NSY0 501 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 KDM5DQ9BY66 1539 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 SOS2Q07890 1332 aaPredicted RBP21.09■□□□□ 0.97
UPF1-201ENST00000262803 CEP104O60308 925 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 PHKG2P15735 406 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 PDE6AP16499 860 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 UAP1Q16222 522 aaPredicted RBP21.09■□□□□ 0.97
UPF1-201ENST00000262803 UNC5CLQ8IV45 518 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 NELFCDQ8IXH7 590 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 CPXCR1Q8N123 301 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 TSC1Q92574 1164 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 CFAP65Q6ZU64 1925 aaKnown RBP21.09■□□□□ 0.97
UPF1-201ENST00000262803 ZFYVE16Q7Z3T8 1539 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 USP17L12C9JPN9 530 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 USP17L21D6R901 530 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 TMOD1P28289 359 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 MFSD14BQ5SR56 506 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 TTLL7Q6ZT98 887 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 CMTR1Q8N1G2 835 aaKnown RBP21.09■□□□□ 0.97
UPF1-201ENST00000262803 MAP4K1Q92918 833 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms