RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TRIM4Q9C037 500 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 DNAJC25Q9H1X3 360 aa14.13□□□□□ -0.15
USP40-201ENST00000251722 MAP7Q14244 749 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 ASIC2Q16515 512 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 ARFGAP2Q8N6H7 521 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 RGS22Q8NE09 1264 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 RAB3IL1Q8TBN0 382 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 DDX17Q92841 729 aaKnown RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 ZNF830Q96NB3 372 aaPredicted RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 SOS2Q07890 1332 aaPredicted RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 E7EWF7 191 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 CHMP2AO43633 222 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 PLCB3Q01970 1234 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 KCTD2Q14681 263 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 GBP7Q8N8V2 638 aaPredicted RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 FAM76AQ8TAV0 307 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 MICAL1Q8TDZ2 1067 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 TCP10Q12799 353 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 PPP1R2P3Q6NXS1 205 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 SYCE1Q8N0S2 351 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 FAM81BQ96LP2 452 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 IREB2P48200 963 aaKnown RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 PDCD2Q16342 344 aaPredicted RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 C8orf34Q49A92 452 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 CPXCR1Q8N123 301 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 KIFC2Q96AC6 838 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 RNF216Q9NWF9 866 aaPredicted RBP14.12□□□□□ -0.15
USP40-201ENST00000251722 ZMYM6O95789 1325 aa14.12□□□□□ -0.15
USP40-201ENST00000251722 TSPOAP1O95153 1857 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 SMCO2A6NFE2 343 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 ODR4Q5SWX8 454 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 KRT40Q6A162 431 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 AFAP1L1Q8TED9 768 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PSTPIP2Q9H939 334 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 SUFUQ9UMX1 484 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PLA2R1Q13018 1463 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 IQGAP3Q86VI3 1631 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PFDN1O60925 122 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PRPF6O94906 941 aaKnown RBP14.11□□□□□ -0.15
USP40-201ENST00000251722 TBC1D8BQ0IIM8 1120 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 TSNAXIP1Q2TAA8 658 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 MMS22LQ6ZRQ5 1243 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 CCDC129Q6ZRS4 1044 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 MASTLQ96GX5 879 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 COA1Q9GZY4 146 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PHLPP2Q6ZVD8 1323 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 TRIM37O94972 964 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 CTDSPL2Q05D32 466 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 CEP85LQ5SZL2 805 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 MYCT1Q8N699 235 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PPFIBP2Q8ND30 876 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 GLG1Q92896 1179 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 CUEDC2Q9H467 287 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PNMA3Q9UL41 463 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 TRAPPC10P48553 1259 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 TTLL7Q6ZT98 887 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 PPP1R9BQ96SB3 815 aa14.11□□□□□ -0.15
USP40-201ENST00000251722 TTC36A6NLP5 189 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 ELMSAN1Q6PJG2 1045 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 CYP26C1Q6V0L0 522 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 GADL1Q6ZQY3 521 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 SEPT12Q8IYM1 358 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP40-201ENST00000251722 RNF34Q969K3 372 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 TPCN1Q9ULQ1 816 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP40-201ENST00000251722 USP17L12C9JPN9 530 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 USP17L21D6R901 530 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PPFIA3O75145 1194 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 RPS6KA4O75676 772 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PCK1P35558 622 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PEX19P40855 299 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 YARSP54577 528 aaKnown RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 RAPGEF1Q13905 1077 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 ZYXQ15942 572 aaKnown RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 BLIDQ8IZY5 108 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 CSGALNACT2Q8N6G5 542 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 FAM204AQ9H8W3 233 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 TRPC6Q9Y210 931 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 SYNRGQ9UMZ2 1314 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 GCFC2P16383 781 aaKnown RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 RFX1P22670 979 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 GRAPQ13588 217 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 GRAPLQ8TC17 118 aaPredicted RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 CLSTN2Q9H4D0 955 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 TNS3Q68CZ2 1445 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 SLC9C1Q4G0N8 1177 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 HERC4Q5GLZ8 1057 aaPredicted RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 DPH6Q7L8W6 267 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 FAM160B2Q86V87 743 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 ATRIPQ8WXE1 791 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 KANSL2Q9H9L4 492 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 ERCC5P28715 1186 aaPredicted RBP14.1□□□□□ -0.15
USP40-201ENST00000251722 KMT5BQ4FZB7 885 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 SLFN13Q68D06 897 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 USP44Q9H0E7 712 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PKD2L1Q9P0L9 805 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 IMPACTQ9P2X3 320 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 SATB2Q9UPW6 733 aa14.1□□□□□ -0.15
USP40-201ENST00000251722 PNMA6EA0A0J9YXQ4 647 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms