RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ARFGAP3Q9NP61 516 aa21.17■□□□□ 0.98
CPSF3-201ENST00000238112 SMARCC1Q92922 1105 aaPredicted RBP21.16■□□□□ 0.98
CPSF3-201ENST00000238112 PARD6BQ9BYG5 372 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 COL22A1Q8NFW1 1626 aaPredicted RBP21.16■□□□□ 0.98
CPSF3-201ENST00000238112 SCN7AQ01118 1682 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 IL17AQ16552 155 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 ZNF658Q5TYW1 1059 aaPredicted RBP21.16■□□□□ 0.98
CPSF3-201ENST00000238112 JAKMIP3Q5VZ66 844 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 ARL6IP4Q66PJ3 421 aaKnown RBP21.16■□□□□ 0.98
CPSF3-201ENST00000238112 BICDL1Q6ZP65 573 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 TMTC1Q8IUR5 882 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 NELFBQ8WX92 580 aa21.16■□□□□ 0.98
CPSF3-201ENST00000238112 TTF2Q9UNY4 1162 aaKnown RBP21.16■□□□□ 0.98
CPSF3-201ENST00000238112 CYP2D6P10635 497 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 KLRK1P26718 216 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 LONP1P36776 959 aaKnown RBP21.15■□□□□ 0.98
CPSF3-201ENST00000238112 CHMP4BP1P59074 171 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 ZNF569Q5MCW4 686 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 TAF3Q5VWG9 929 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 MTRQ99707 1265 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 VPS16Q9H269 839 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 LRRC10BA6NIK2 292 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 TBC1D8O95759 1140 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 RPN1P04843 607 aaKnown RBP21.15■□□□□ 0.98
CPSF3-201ENST00000238112 HIBADHP31937 336 aaKnown RBP21.15■□□□□ 0.98
CPSF3-201ENST00000238112 COPB1P53618 953 aaKnown RBP21.15■□□□□ 0.98
CPSF3-201ENST00000238112 TRIM14Q14142 442 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 SRGAP1Q7Z6B7 1085 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 NUP88Q99567 741 aaPredicted RBP21.15■□□□□ 0.98
CPSF3-201ENST00000238112 KAT14Q9H8E8 782 aa21.15■□□□□ 0.98
CPSF3-201ENST00000238112 PDS5AQ29RF7 1337 aaKnown RBP21.14■□□□□ 0.98
CPSF3-201ENST00000238112 A0A1B0GUL6 1792 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 A0A0U1RQJ8 604 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 ADAMTS2O95450 1211 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 FECHP22830 423 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 SBK1Q52WX2 424 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 TCP11X2Q5H9J9 407 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 BLIDQ8IZY5 108 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 CEP112Q8N8E3 955 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 ATRIPQ8WXE1 791 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 ZSWIM4Q9H7M6 989 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 ABHD10Q9NUJ1 306 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 TAB2Q9NYJ8 693 aa21.14■□□□□ 0.97
CPSF3-201ENST00000238112 CCDC66A2RUB6 948 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 KCNJ18B7U540 433 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 VEGFAP15692 232 aaPredicted RBP21.13■□□□□ 0.97
CPSF3-201ENST00000238112 PRDX5P30044 214 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 STAT6P42226 847 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 TUBB2AQ13885 445 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 KCNJ12Q14500 433 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 TUBB2BQ9BVA1 445 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 TFCP2L1Q9NZI6 479 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 CDC23Q9UJX2 597 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 CTAGE9A4FU28 777 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 KIF4BQ2VIQ3 1234 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 CYP26C1Q6V0L0 522 aa21.13■□□□□ 0.97
CPSF3-201ENST00000238112 SASH3O75995 380 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 RPS8P62241 208 aaKnown RBP21.12■□□□□ 0.97
CPSF3-201ENST00000238112 ACRBPQ8NEB7 543 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 MCM9Q9NXL9 1143 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 ADAMTS3O15072 1205 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 RASSF8Q8NHQ8 419 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 SH3GLB2Q9NR46 395 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 PUF60Q9UHX1 559 aaKnown RBP21.12■□□□□ 0.97
CPSF3-201ENST00000238112 TAF1P21675 1872 aa21.12■□□□□ 0.97
CPSF3-201ENST00000238112 POLR3GO15318 223 aaPredicted RBP21.11■□□□□ 0.97
CPSF3-201ENST00000238112 WWC2Q6AWC2 1192 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 RCSD1Q6JBY9 416 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 ANKRD2Q9GZV1 360 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 PCDHA4Q9UN74 947 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 MAPK8IP1Q9UQF2 711 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 CCDC151A5D8V7 595 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 ERICH4A6NGS2 130 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 CDC25AP30304 524 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 ERVK-24P63145 666 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 SLC4A8Q2Y0W8 1093 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 SLC10A5Q5PT55 438 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 GPKOWQ92917 476 aaPredicted RBP eCLIP21.11■□□□□ 0.97
CPSF3-201ENST00000238112 DISC1Q9NRI5 854 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 GDAQ9Y2T3 454 aa21.11■□□□□ 0.97
CPSF3-201ENST00000238112 CCDC194A0A1B0GVG4 234 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 PRCPP42785 496 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 UBXN1Q04323 297 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 BRD3Q15059 726 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 DZIP1Q86YF9 867 aaKnown RBP21.1■□□□□ 0.97
CPSF3-201ENST00000238112 SLC35F6Q8N357 371 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 C4orf32Q8N8J7 132 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 BAZ2BQ9UIF8 2168 aaKnown RBP21.1■□□□□ 0.97
CPSF3-201ENST00000238112 LAMB1P07942 1786 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 FAM205AQ6ZU69 1335 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 H7C1D1 291 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 KRT9P35527 623 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 TFAP4Q01664 338 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 TBC1D9BQ66K14 1250 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 TMED8Q6PL24 325 aaPredicted RBP21.1■□□□□ 0.97
CPSF3-201ENST00000238112 DTHD1Q6ZMT9 781 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 LINC00116Q8NCU8 138 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 PNMA1Q8ND90 353 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 NLRP3Q96P20 1036 aa21.1■□□□□ 0.97
CPSF3-201ENST00000238112 POTEB2H3BUK9 544 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms