RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 TUBB8Q3ZCM7 444 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 TRAPPC11Q7Z392 1133 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 CCDC170Q8IYT3 715 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 ANKRD13CQ8N6S4 541 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 TRPC6Q9Y210 931 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 SPRED3Q2MJR0 410 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 SLC30A9Q6PML9 568 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 ABHD10Q9NUJ1 306 aa16.34■□□□□ 0.21
PTPRA-201ENST00000216877 GUCY2DQ02846 1103 aa16.33■□□□□ 0.21
PTPRA-201ENST00000216877 C1orf141Q5JVX7 400 aa16.33■□□□□ 0.21
PTPRA-201ENST00000216877 HOMEZQ8IX15 550 aa16.33■□□□□ 0.21
PTPRA-201ENST00000216877 TSC22D3Q99576 134 aa16.33■□□□□ 0.21
PTPRA-201ENST00000216877 GGT7Q9UJ14 662 aa16.33■□□□□ 0.21
PTPRA-201ENST00000216877 LUC7L2Q9Y383 392 aaKnown RBP16.33■□□□□ 0.21
PTPRA-201ENST00000216877 MDH1P40925 334 aaKnown RBP16.33■□□□□ 0.2
PTPRA-201ENST00000216877 NBPF10Q6P3W6 841 aaKnown RBP16.33■□□□□ 0.2
PTPRA-201ENST00000216877 PICK1Q9NRD5 415 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 PHF20L1A8MW92 1017 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 NEFHP12036 1026 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 SCTRP47872 440 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 EPHB4P54760 987 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 EVA1CP58658 441 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 KRI1Q8N9T8 703 aaKnown RBP16.33■□□□□ 0.2
PTPRA-201ENST00000216877 HAUS4Q9H6D7 363 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 NEDD4P46934 1319 aa16.33■□□□□ 0.2
PTPRA-201ENST00000216877 RPS6KA3P51812 740 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 AMPD2Q01433 879 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 KRT40Q6A162 431 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 BZW1Q7L1Q6 419 aaKnown RBP16.32■□□□□ 0.2
PTPRA-201ENST00000216877 CTAGE1Q96RT6 745 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 EPB41L5Q9HCM4 733 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 MYO1AQ9UBC5 1043 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 ZC3H4Q9UPT8 1303 aaKnown RBP16.32■□□□□ 0.2
PTPRA-201ENST00000216877 A0A1B0GTH6 734 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 RNF225M0QZC1 329 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-201ENST00000216877 PRC1O43663 620 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 PECAM1P16284 738 aaPredicted RBP16.32■□□□□ 0.2
PTPRA-201ENST00000216877 KIF5AQ12840 1032 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 RRAGBQ5VZM2 374 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 FAM107AO95990 144 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 MXRA7P84157 204 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 GRIN1Q05586 938 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 OR2W6PQ8NHA6 318 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 CUL5Q93034 780 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 ITFG2Q969R8 447 aa16.32■□□□□ 0.2
PTPRA-201ENST00000216877 TMEM2Q9UHN6 1383 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 TAX1BP1Q86VP1 789 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 UBAC1Q9BSL1 405 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 ALDH8A1Q9H2A2 487 aaPredicted RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 SLC39A2Q9NP94 309 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 TARSL2A2RTX5 802 aaKnown RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 POLE2P56282 527 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 BEND3Q5T5X7 828 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 GKAP1Q5VSY0 366 aaPredicted RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 RCSD1Q6JBY9 416 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 DYDC1Q8WWB3 177 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 TATDN2Q93075 761 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 CCDC47Q96A33 483 aaKnown RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 XAGE2Q96GT9 111 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 RPGRIP1Q96KN7 1286 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 OSBPL7Q9BZF2 842 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 NPHP4O75161 1426 aaPredicted RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 GMNCA6NCL1 334 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 ZSCAN5CA6NGD5 496 aaPredicted RBP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 PLCD1P51178 756 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 SAFBQ15424 915 aaKnown RBP eCLIP16.31■□□□□ 0.2
PTPRA-201ENST00000216877 SPA17Q15506 151 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 ALS2CLQ60I27 953 aa16.31■□□□□ 0.2
PTPRA-201ENST00000216877 ZMYM6O95789 1325 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 SMIM23A6NLE4 172 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 GNAT3A8MTJ3 354 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 ATP6V1G2O95670 118 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 PDHA1P08559 390 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 ZNF18P17022 549 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 TRIM21P19474 475 aaKnown RBP16.3■□□□□ 0.2
PTPRA-201ENST00000216877 SPATA1Q5VX52 437 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 GNAT1P11488 350 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 PCK1P35558 622 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 SLC8A3P57103 927 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 IFFO1Q0D2I5 559 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 TRIM58Q8NG06 486 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 HOOK2Q96ED9 719 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 MYL10Q9BUA6 226 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 LRRC37A3O60309 1634 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 MAP3K19Q56UN5 1328 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 KIF5BP33176 963 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 LAMB3Q13751 1172 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 ARFGAP2Q8N6H7 521 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 SEC16BQ96JE7 1060 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 NLRP3Q96P20 1036 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 DBNDD2Q9BQY9 259 aa16.3■□□□□ 0.2
PTPRA-201ENST00000216877 CARSP49589 748 aaKnown RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 ANKRD20A8PQ5CZ79 823 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 USP49Q70CQ1 688 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 AENQ8WTP8 325 aaKnown RBP16.29■□□□□ 0.2
PTPRA-201ENST00000216877 CCDC113Q9H0I3 377 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 BLZF1Q9H2G9 400 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 SNRKQ9NRH2 765 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 STIM2Q9P246 746 aa16.29■□□□□ 0.2
PTPRA-201ENST00000216877 PHF8Q9UPP1 1060 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms