RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 P3H4Q92791 437 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 PCDHA12Q9UN75 941 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 TNFAIP1Q13829 316 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 GPBP1Q86WP2 473 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 RRAGDQ9NQL2 400 aaPredicted RBP14.97□□□□□ -0.01
SF3A1-201ENST00000215793 PNMA2Q9UL42 364 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 TRPC6Q9Y210 931 aa14.97□□□□□ -0.01
SF3A1-201ENST00000215793 ECM2O94769 699 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PRPF6O94906 941 aaKnown RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 GSPT1P15170 499 aaKnown RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PCK1P35558 622 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 CCDC89Q8N998 374 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 ZBTB38Q8NAP3 1195 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PNMA1Q8ND90 353 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 TNKSO95271 1327 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 N4BP1O75113 896 aaKnown RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 ADKP55263 362 aaKnown RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 MIER3Q7Z3K6 550 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 HACE1Q8IYU2 909 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 ATP2A3Q93084 1043 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 HAUS4Q9H6D7 363 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PCCAP05165 728 aaPredicted RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 NEK8Q86SG6 692 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 NIM1KQ8IY84 436 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 SLFN12Q8IYM2 578 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 MRFAP1L1Q96HT8 127 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PSTPIP2Q9H939 334 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 PPANQ9NQ55 473 aaKnown RBP14.96□□□□□ -0.01
SF3A1-201ENST00000215793 MYO1AQ9UBC5 1043 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 MAST1Q9Y2H9 1570 aa14.96□□□□□ -0.01
SF3A1-201ENST00000215793 H0YCG3 227 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 GBP1P32455 592 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 ZNF131P52739 623 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 PTH1RQ03431 593 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 MORC3Q14149 939 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 NAA25Q14CX7 972 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 LONRF2Q1L5Z9 754 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 ANKRD20A3Q5VUR7 823 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 RPUSD2Q8IZ73 545 aaKnown RBP14.96□□□□□ -0.02
SF3A1-201ENST00000215793 DEPTORQ8TB45 409 aa14.96□□□□□ -0.02
SF3A1-201ENST00000215793 LSM14BQ9BX40 385 aaKnown RBP14.96□□□□□ -0.02
SF3A1-201ENST00000215793 METTL14Q9HCE5 456 aaKnown RBP14.96□□□□□ -0.02
SF3A1-201ENST00000215793 GTPBP6O43824 516 aaPredicted RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 OR52Z1P0C646 297 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 SCG2P13521 617 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 ADD1P35611 737 aaKnown RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 GTF2IP78347 998 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 HYOU1Q9Y4L1 999 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 TACC3Q9Y6A5 838 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 RNF40O75150 1001 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 IRX3P78415 501 aaPredicted RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 IL17REQ8NFR9 667 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 NR1I2O75469 434 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 TCP1P17987 556 aaKnown RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 U2AF1L4Q8WU68 220 aaKnown RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 CARD10Q9BWT7 1032 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 LARSQ9P2J5 1176 aaKnown RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 TPCN1Q9ULQ1 816 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 M0QZ92 97 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 DDAH1O94760 285 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 TSNAXIP1Q2TAA8 658 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 CASC4Q6P4E1 433 aa14.95□□□□□ -0.02
SF3A1-201ENST00000215793 ARHGEF2Q92974 986 aaKnown RBP14.95□□□□□ -0.02
SF3A1-201ENST00000215793 PHKG2P15735 406 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 OAS2P29728 719 aaKnown RBP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 ETF1P62495 437 aaKnown RBP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 UBE3CQ15386 1083 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 FAM98CQ17RN3 349 aaKnown RBP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 GLG1Q92896 1179 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 KLRF2D3W0D1 207 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 RDH13Q8NBN7 331 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 MRPL11Q9Y3B7 192 aaKnown RBP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 FGAP02671 866 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 ATP2B4P23634 1241 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 SEPT6Q14141 434 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 PROCA1Q8NCQ7 364 aaPredicted RBP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.94□□□□□ -0.02
SF3A1-201ENST00000215793 COPRSQ9NQ92 184 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 COL4A3BPQ9Y5P4 624 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 ATP10AO60312 1499 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 ADGRL2O95490 1459 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 RASSF2P50749 326 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 NACA2Q9H009 215 aa14.94□□□□□ -0.02
SF3A1-201ENST00000215793 RGS16O15492 202 aaPredicted RBP14.93□□□□□ -0.02
SF3A1-201ENST00000215793 SPATA1Q5VX52 437 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 PNMA8AQ86V59 439 aaPredicted RBP14.93□□□□□ -0.02
SF3A1-201ENST00000215793 VPS37BQ9H9H4 285 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 AS3MTQ9HBK9 375 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 HOMER3Q9NSC5 361 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 ABCC2Q92887 1545 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 TECP42680 631 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 FNBP4Q8N3X1 1017 aaPredicted RBP14.93□□□□□ -0.02
SF3A1-201ENST00000215793 CCDC24Q8N4L8 307 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 VCXQ9H320 206 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 MAGEF1Q9HAY2 307 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 RIC8AQ9NPQ8 531 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 PPIP5K2O43314 1243 aa14.93□□□□□ -0.02
SF3A1-201ENST00000215793 LONP1P36776 959 aaKnown RBP14.93□□□□□ -0.02
SF3A1-201ENST00000215793 SLC12A2P55011 1212 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms