RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ORC2Q13416 577 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 GLE1Q53GS7 698 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 FERMT3Q86UX7 667 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ANGPTL2Q9UKU9 493 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 CCDC186Q7Z3E2 898 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 JDP2Q8WYK2 163 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 RIOK1Q9BRS2 568 aaKnown RBP6.67□□□□□ -1.34
VPS13D-201ENST00000011700 ZNF212Q9UDV6 495 aa6.67□□□□□ -1.34
VPS13D-201ENST00000011700 RFX1P22670 979 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 GRIN1Q05586 938 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 USP48Q86UV5 1035 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM45Q9H8W5 580 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DACT1Q9NYF0 836 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PCDH11XQ9BZA7 1347 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PCDH11YQ9BZA8 1340 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 CCDC151A5D8V7 595 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RSPH10B2B2RC85 870 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RSPH10BP0C881 870 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 C4BPBP20851 252 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 CYB5RLQ6IPT4 315 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RAB44Q7Z6P3 723 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MTBPQ96DY7 904 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MAP3K5Q99683 1374 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 H7C1D1 291 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DCTN3O75935 186 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 ASIC2Q16515 512 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 LRCH2Q5VUJ6 765 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 KRBA2Q6ZNG9 492 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DHX38Q92620 1227 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 EXOC4Q96A65 974 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM62Q9BVG3 475 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DDX41Q9UJV9 622 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PYGBP11216 843 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 EEF1GP26641 437 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 STX2P32856 288 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RFC4P35249 363 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 NSFP46459 744 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 KLC3Q6P597 504 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 NBPF5PQ86XG9 351 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 CTAGE3PQ8IX95 158 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 TRIM6Q9C030 488 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 OLFML3Q9NRN5 406 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 EDC4Q6P2E9 1401 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MROH5Q6ZUA9 1318 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MAGEB6P1A0A0J9YX57 407 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PRPSAP1Q14558 356 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RSAD2Q8WXG1 361 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 URB1O60287 2271 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 YEATS2Q9ULM3 1422 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 KRT15P19012 456 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 KRR1Q13601 381 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SNCBQ16143 134 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SFMBT2Q5VUG0 894 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PATL1Q86TB9 770 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 AOPEPQ8N6M6 819 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 UPF3AQ9H1J1 476 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DNAJC17Q9NVM6 304 aaKnown RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SMARCAL1Q9NZC9 954 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SCOCQ9UIL1 159 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MAP3K2Q9Y2U5 619 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 RHPN1Q8TCX5 695 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 MRFAP1L1Q96HT8 127 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 DNM3Q9UQ16 869 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SPAG17Q6Q759 2223 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 LPXNO60711 386 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 PHEXP78562 749 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 SUPT20HQ8NEM7 779 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 EFCC1Q9HA90 598 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 ASIC3Q9UHC3 531 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 KCNH3Q9ULD8 1083 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 ARHGAP26Q9UNA1 814 aa6.66□□□□□ -1.34
VPS13D-201ENST00000011700 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.66□□□□□ -1.34
VPS13D-201ENST00000011700 TCOF1Q13428 1488 aaKnown RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 LMOD1P29536 600 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 CDCA7LQ96GN5 454 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 KDM5CP41229 1560 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 RPAINQ86UA6 219 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 PPANQ9NQ55 473 aaKnown RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 SCN8AQ9UQD0 1980 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 COL17A1Q9UMD9 1497 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 SCP2P22307 547 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 EFHBQ8N7U6 833 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 DDX54Q8TDD1 881 aaKnown RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 CACTINQ8WUQ7 758 aaKnown RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 RNF113AO15541 343 aaKnown RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 TNFAIP3P21580 790 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 GNPTABQ3T906 1256 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 AKAP4Q5JQC9 854 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 STAG1Q8WVM7 1258 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 ASXL2Q76L83 1435 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 KIAA0232Q92628 1395 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 PTPREP23469 700 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 DRP2Q13474 957 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 TTLL12Q14166 644 aaPredicted RBP6.65□□□□□ -1.34
VPS13D-201ENST00000011700 PALM2Q8IXS6 379 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 NME8Q8N427 588 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 ATP6V0A1Q93050 837 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 LRGUKQ96M69 825 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 RILPQ96NA2 401 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 315.7 ms