RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	CAP2	P40123	477 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	AKAP17A	Q02040	695 aa	Known RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	FUT2	Q10981	343 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	IFFO2	Q5TF58	517 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	ZC3H15	Q8WU90	426 aa	Known RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	PHKB	Q93100	1093 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	DCPS	Q96C86	337 aa	Known RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	RNF26	Q9BY78	433 aa	Predicted RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	MAD2L2	Q9UI95	211 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	SYNPO2	Q9UMS6	1093 aa		13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	SCAF8	Q9UPN6	1271 aa	Known RBP	13.67	□□□□□ -0.22
CLN6-223	ENST00000637823	IQCA1L	A6NCM1	817 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	DCAF8L1	A6NGE4	600 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	PHF20L1	A8MW92	1017 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	PLEKHA8P1	O95397	391 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	DEXI	O95424	95 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	F13A1	P00488	732 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	PARP1	P09874	1014 aa	Known RBP	13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	SMARCA1	P28370	1054 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	EPHX2	P34913	555 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	JAG1	P78504	1218 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	ATP2B2	Q01814	1243 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	ICA1	Q05084	483 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	SUPT20HL1	Q3ZLR7	823 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	SIAH1	Q8IUQ4	282 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	SRBD1	Q8N5C6	995 aa	Known RBP	13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	C8orf76	Q96K31	380 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	GBP4	Q96PP9	640 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	ZNF341	Q9BYN7	854 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	RBM27	Q9P2N5	1060 aa	Known RBP	13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	ATP6V1D	Q9Y5K8	247 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	MYH15	Q9Y2K3	1946 aa		13.66	□□□□□ -0.22
CLN6-223	ENST00000637823	USP17L5	A8MUK1	530 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	KLRF2	D3W0D1	207 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	PPFIA3	O75145	1194 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ASNS	P08243	561 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	SNHG28	P0DPA3	235 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ASPRV1	Q53RT3	343 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	CLEC10A	Q8IUN9	316 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	CMTR1	Q8N1G2	835 aa	Known RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	LRRC47	Q8N1G4	583 aa	Known RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	STAG2	Q8N3U4	1231 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	CCDC82	Q8N4S0	544 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	FBXO18	Q8NFZ0	1043 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ALG1	Q9BT22	464 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ARHGEF10L	Q9HCE6	1279 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ZNF112	Q9UJU3	913 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	ZBTB21	Q9ULJ3	1066 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823		V9GY48	417 aa	Predicted RBP	13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	DOCK1	Q14185	1865 aa		13.65	□□□□□ -0.22
CLN6-223	ENST00000637823	CTNND1	O60716	968 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	BAG4	O95429	457 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	PDHB	P11177	359 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	TRIM29	Q14134	588 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	NFKBIB	Q15653	356 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	USP17L2	Q6R6M4	530 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	CDC37L1	Q7L3B6	337 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	PNMA8A	Q86V59	439 aa	Predicted RBP	13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	SULF1	Q8IWU6	871 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	DCAF4	Q8WV16	495 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	SPZ1	Q9BXG8	430 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	MTMR7	Q9Y216	660 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	CNTNAP5	Q8WYK1	1306 aa		13.64	□□□□□ -0.23
CLN6-223	ENST00000637823	POTEC	B2RU33	542 aa		13.63	□□□□□ -0.23
CLN6-223	ENST00000637823	GPATCH4	Q5T3I0	446 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-223	ENST00000637823	GMCL1P1	Q8NEA9	526 aa		13.63	□□□□□ -0.23
CLN6-223	ENST00000637823		F5H6K3	240 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	GOLGA8H	P0CJ92	632 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	XBP1	P17861	261 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	MCM4	P33991	863 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	FOSB	P53539	338 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	KLRC3	Q07444	240 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	ZNF543	Q08ER8	600 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	PKN1	Q16512	942 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	PRAMEF18	Q5VWM3	479 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	SLFN13	Q68D06	897 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	KRT40	Q6A162	431 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	USP48	Q86UV5	1035 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	GMCL1	Q96IK5	515 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	AIFM3	Q96NN9	605 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	SH2D4A	Q9H788	454 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	GOPC	Q9HD26	462 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823	TMX2	Q9Y320	296 aa		13.62	□□□□□ -0.23
CLN6-223	ENST00000637823		A0A1W2PRG0	241 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	GOLGA6L22	H0YM25	854 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	SCG2	P13521	617 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	GUCY1B3	Q02153	619 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	REST	Q13127	1097 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	PFKFB3	Q16875	520 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	MCTP1	Q6DN14	999 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	KRT26	Q7Z3Y9	468 aa		13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	FAM177A1	Q8N128	213 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	RRP36	Q96EU6	259 aa	Known RBP	13.61	□□□□□ -0.23
CLN6-223	ENST00000637823	RIOX1	Q9H6W3	641 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms