RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 APPBP2Q92624 585 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 DYNLL2Q96FJ2 89 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 CDX2Q99626 313 aaPredicted RBP13.94□□□□□ -0.18
CLN3-257ENST00000637110 ASCC2Q9H1I8 757 aaPredicted RBP13.94□□□□□ -0.18
CLN3-257ENST00000637110 SWAP70Q9UH65 585 aa13.94□□□□□ -0.18
CLN3-257ENST00000637110 USP14P54578 494 aa13.93□□□□□ -0.18
CLN3-257ENST00000637110 STK11IPQ8N1F8 1099 aa13.93□□□□□ -0.18
CLN3-257ENST00000637110 SLC44A5Q8NCS7 719 aa13.93□□□□□ -0.18
CLN3-257ENST00000637110 PRUNE2Q8WUY3 3088 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 MINDY4BA8MYZ0 360 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 COL6A1P12109 1028 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 GABPAQ06546 454 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 SEPT2Q15019 361 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 C12orf60Q5U649 245 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 CCAR1Q8IX12 1150 aaKnown RBP13.92□□□□□ -0.18
CLN3-257ENST00000637110 TRMT44Q8IYL2 757 aaKnown RBP13.92□□□□□ -0.18
CLN3-257ENST00000637110 PI4K2BQ8TCG2 481 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 ACER1Q8TDN7 264 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 OSBP2Q969R2 916 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 STRBPQ96SI9 672 aaKnown RBP13.92□□□□□ -0.18
CLN3-257ENST00000637110 P2RX7Q99572 595 aaKnown RBP13.92□□□□□ -0.18
CLN3-257ENST00000637110 LNPKQ9C0E8 428 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 EMILIN3Q9NT22 766 aa13.92□□□□□ -0.18
CLN3-257ENST00000637110 GPAA1O43292 621 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 PRKAR2AP13861 404 aaKnown RBP13.91□□□□□ -0.18
CLN3-257ENST00000637110 GNAT2P19087 354 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 TDO2P48775 406 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 CDK8P49336 464 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 ATP2B2Q01814 1243 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 TRIM32Q13049 653 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 LRRC26Q2I0M4 334 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 CTR9Q6PD62 1173 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 TMEM179Q6ZVK1 233 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 ARPP21Q9UBL0 812 aaPredicted RBP13.91□□□□□ -0.18
CLN3-257ENST00000637110 PRKAG2Q9UGJ0 569 aa13.91□□□□□ -0.18
CLN3-257ENST00000637110 BAZ2AQ9UIF9 1905 aaKnown RBP13.91□□□□□ -0.18
CLN3-257ENST00000637110 M0R2C6 588 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 TNFRSF10AO00220 468 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 AKR1B1P15121 316 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 HOXA7P31268 230 aaPredicted RBP13.9□□□□□ -0.18
CLN3-257ENST00000637110 IRX6P78412 446 aaPredicted RBP13.9□□□□□ -0.18
CLN3-257ENST00000637110 MAP3K21Q5TCX8 1036 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 TRIB2Q92519 343 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 PAGR1Q9BTK6 254 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 NACAP1Q9BZK3 213 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 SEMA6BQ9H3T3 888 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 MKNK2Q9HBH9 465 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 ARHGEF10LQ9HCE6 1279 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 CWC22Q9HCG8 908 aaKnown RBP13.9□□□□□ -0.18
CLN3-257ENST00000637110 GJD2Q9UKL4 321 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 LOC285556D6RIA3 1793 aa13.9□□□□□ -0.18
CLN3-257ENST00000637110 GSG1L2A8MUP6 293 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 TRIM6-TRIM34B2RNG4 842 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L15C9J2P7 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L13C9JLJ4 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L11C9JVI0 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L18D6R9N7 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L22D6RA61 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L17D6RBQ6 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L19D6RCP7 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L20D6RJB6 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 SMIM22K7EJ46 135 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 RAD21O60216 631 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 FOSL2P15408 326 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 GUCY1A2P33402 732 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 PDE1AP54750 535 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 HERVK_113P62684 666 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 USP17L24Q0WX57 530 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 GPRC5AQ8NFJ5 357 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 SOCS4Q8WXH5 440 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 EVI5LQ96CN4 794 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 CCDC17Q96LX7 622 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 SEC62Q99442 399 aaKnown RBP13.89□□□□□ -0.19
CLN3-257ENST00000637110 KIAA1683Q9H0B3 1180 aa13.89□□□□□ -0.19
CLN3-257ENST00000637110 PLXNB2O15031 1838 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 PATL2C9JE40 543 aaKnown RBP13.88□□□□□ -0.19
CLN3-257ENST00000637110 IGHDP01880 384 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 XRCC5P13010 732 aaKnown RBP13.88□□□□□ -0.19
CLN3-257ENST00000637110 ZKSCAN1P17029 563 aaPredicted RBP13.88□□□□□ -0.19
CLN3-257ENST00000637110 CYP2B6P20813 491 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 PLA2G5P39877 138 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 ICA1Q05084 483 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 TJAP1Q5JTD0 557 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 GIMAP6Q6P9H5 292 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 C16orf86Q6ZW13 317 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 GTF3C2Q8WUA4 911 aaPredicted RBP13.88□□□□□ -0.19
CLN3-257ENST00000637110 RILPL2Q969X0 211 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 FAM122AQ96E09 287 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 NUDT12Q9BQG2 462 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 SH2D4AQ9H788 454 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 MUC3AQ02505 3323 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 MYH8P13535 1937 aa13.88□□□□□ -0.19
CLN3-257ENST00000637110 PEX10O60683 326 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 VCAM1P19320 739 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 SBK1Q52WX2 424 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
CLN3-257ENST00000637110 CATSPERGQ6ZRH7 1159 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 CHD1LQ86WJ1 897 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 CLEC10AQ8IUN9 316 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 SMC5Q8IY18 1101 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms