RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, human

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1A-223	ENST00000636058	SMC3	Q9UQE7	1217 aa		11.18	□□□□□ -0.62
CACNA1A-223	ENST00000636058	OTOF	Q9HC10	1997 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058		A0A1W2PRG0	241 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CPLX1	O14810	134 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	USP2	O75604	605 aa	Predicted RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CDKL5	O76039	1030 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	SNHG28	P0DPA3	235 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PDHB	P11177	359 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	IFNAR1	P17181	557 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	GJB2	P29033	226 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	KIF5B	P33176	963 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	HMGN5	P82970	282 aa	Known RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	NOL9	Q5SY16	702 aa	Known RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	MAP1S	Q66K74	1059 aa	Predicted RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CPLX2	Q6PUV4	134 aa	Known RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	TMTC3	Q6ZXV5	915 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	SCYL3	Q8IZE3	742 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	GMCL1P1	Q8NEA9	526 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ZNF526	Q8TF50	670 aa	Predicted RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ARHGEF10L	Q9HCE6	1279 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	MAD2L2	Q9UI95	211 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	FZD1	Q9UP38	647 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CLEC11A	Q9Y240	323 aa		11.17	□□□□□ -0.62
CACNA1A-223	ENST00000636058	STK36	Q9NRP7	1315 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PALM3	A6NDB9	673 aa	Predicted RBP	11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	USP17L5	A8MUK1	530 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PPP1R12B	O60237	982 aa	Predicted RBP	11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	DTNB	O60941	627 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	FDPS	P14324	419 aa	Known RBP	11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	NF2	P35240	595 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ECE1	P42892	770 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ATP2B2	Q01814	1243 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	FUT2	Q10981	343 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	MAP3K11	Q16584	847 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	RASGRP2	Q7LDG7	609 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	NBPF11	Q86T75	865 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	TMX2	Q9Y320	296 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PHIP	Q8WWQ0	1821 aa		11.16	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PLEKHA8P1	O95397	391 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	FMNL1	O95466	1100 aa	Predicted RBP	11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PARP1	P09874	1014 aa	Known RBP	11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PTPRA	P18433	802 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	GNAQ	P50148	359 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PRKG1	Q13976	671 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ASPRV1	Q53RT3	343 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	USP17L2	Q6R6M4	530 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CMTR1	Q8N1G2	835 aa	Known RBP	11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	STAG2	Q8N3U4	1231 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	SRBD1	Q8N5C6	995 aa	Known RBP	11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	ACER1	Q8TDN7	264 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	DCAF4	Q8WV16	495 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	DDX11	Q96FC9	970 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	GMCL1	Q96IK5	515 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	SH2D4A	Q9H788	454 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CHMP5	Q9NZZ3	219 aa		11.15	□□□□□ -0.62
CACNA1A-223	ENST00000636058	CNTNAP5	Q8WYK1	1306 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058		F5H6K3	240 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	TRAF5	O00463	557 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PPFIA3	O75145	1194 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	NDUFB10	O96000	172 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	GOLGA8H	P0CJ92	632 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SMARCA1	P28370	1054 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	IREB2	P48200	963 aa	Known RBP	11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	MAP3K9	P80192	1104 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	KLRC3	Q07444	240 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SSRP1	Q08945	709 aa	Known RBP	11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	ZNF543	Q08ER8	600 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	VGLL4	Q14135	290 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SLFN13	Q68D06	897 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	CCDC84	Q86UT8	332 aa	Predicted RBP	11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PHKB	Q93100	1093 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	LZTS2	Q9BRK4	669 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	WDR18	Q9BV38	432 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	RNF26	Q9BY78	433 aa	Predicted RBP	11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PICK1	Q9NRD5	415 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	ORC3	Q9UBD5	711 aa	Predicted RBP	11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	MTMR7	Q9Y216	660 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SNCAIP	Q9Y6H5	919 aa		11.14	□□□□□ -0.63
CACNA1A-223	ENST00000636058	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	KLRF2	D3W0D1	207 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PRPF3	O43395	683 aa	Known RBP	11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	CYTH3	O43739	400 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PDIA4	P13667	645 aa	Known RBP	11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PDC	P20941	246 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SYT1	P21579	422 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SLC1A4	P43007	532 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	PKP1	Q13835	747 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SLC35G1	Q2M3R5	365 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	KIAA1755	Q5JYT7	1200 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	GPATCH4	Q5T3I0	446 aa	Known RBP	11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	CHADL	Q6NUI6	762 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	TRIM22	Q8IYM9	498 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	ANKRD13A	Q8IZ07	590 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	CCDC82	Q8N4S0	544 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	FAM184A	Q8NB25	1140 aa		11.13	□□□□□ -0.63
CACNA1A-223	ENST00000636058	SPZ1	Q9BXG8	430 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms