RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 U2AF1L4Q8WU68 220 aaKnown RBP21.54■■□□□ 1.04
CLN3-243ENST00000635973 GTF3C2Q8WUA4 911 aaPredicted RBP21.54■■□□□ 1.04
CLN3-243ENST00000635973 DPF3Q92784 378 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 SHISA4Q96DD7 197 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 CWC22Q9HCG8 908 aaKnown RBP21.54■■□□□ 1.04
CLN3-243ENST00000635973 MORF4L1Q9UBU8 362 aa21.54■■□□□ 1.04
CLN3-243ENST00000635973 MPHOSPH10O00566 681 aaKnown RBP21.53■■□□□ 1.04
CLN3-243ENST00000635973 FOXP2O15409 715 aa21.53■■□□□ 1.04
CLN3-243ENST00000635973 TFRCP02786 760 aaKnown RBP21.53■■□□□ 1.04
CLN3-243ENST00000635973 CASC1Q6TDU7 716 aa21.53■■□□□ 1.04
CLN3-243ENST00000635973 C16orf86Q6ZW13 317 aa21.53■■□□□ 1.04
CLN3-243ENST00000635973 HTATIP2Q9BUP3 242 aa21.53■■□□□ 1.04
CLN3-243ENST00000635973 EMILIN3Q9NT22 766 aa21.53■■□□□ 1.04
CLN3-243ENST00000635973 SMIM22K7EJ46 135 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 SGPL1O95470 568 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 CAPN2P17655 700 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 CDK8P49336 464 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 PPARAQ07869 468 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 PAGR1Q9BTK6 254 aa21.52■■□□□ 1.04
CLN3-243ENST00000635973 ROBO3Q96MS0 1386 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L15C9J2P7 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L13C9JLJ4 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L11C9JVI0 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L18D6R9N7 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L22D6RA61 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L17D6RBQ6 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L19D6RCP7 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L20D6RJB6 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 CDC45O75419 566 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 USP17L24Q0WX57 530 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 ALX1Q15699 326 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 DEFB118Q96PH6 123 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 MKNK2Q9HBH9 465 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 ZNF287Q9HBT7 754 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 ZMYM6O95789 1325 aa21.51■■□□□ 1.03
CLN3-243ENST00000635973 FARP2O94887 1054 aaPredicted RBP21.5■■□□□ 1.03
CLN3-243ENST00000635973 FGAP02671 866 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 HMGCRP04035 888 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 MAPK4P31152 587 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 NUDT12Q9BQG2 462 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 DSCC1Q9BVC3 393 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 KIAA1683Q9H0B3 1180 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 IL25Q9H293 177 aa21.5■■□□□ 1.03
CLN3-243ENST00000635973 SGSM2O43147 1006 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 CYP2B6P20813 491 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 ERVK-9P63128 1117 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 ERVK-24P63145 666 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 PDE4BQ07343 736 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 SOCS4Q8WXH5 440 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 C12orf42Q96LP6 360 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 TXNRD2Q9NNW7 524 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 RBPJLQ9UBG7 517 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 GJD2Q9UKL4 321 aa21.49■■□□□ 1.03
CLN3-243ENST00000635973 CCNA1P78396 465 aa21.48■■□□□ 1.03
CLN3-243ENST00000635973 KIAA1211Q6ZU35 1233 aa21.48■■□□□ 1.03
CLN3-243ENST00000635973 CCDC17Q96LX7 622 aa21.48■■□□□ 1.03
CLN3-243ENST00000635973 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLN3-243ENST00000635973 HMX1Q9NP08 348 aaPredicted RBP21.48■■□□□ 1.03
CLN3-243ENST00000635973 PLXNB2O15031 1838 aa21.48■■□□□ 1.03
CLN3-243ENST00000635973 H0YGN5 161 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 PEX10O60683 326 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 HAND2P61296 217 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 CTDSPL2Q05D32 466 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 SEPT2Q15019 361 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 ZNF444Q8N0Y2 327 aaPredicted RBP21.47■■□□□ 1.03
CLN3-243ENST00000635973 ACER1Q8TDN7 264 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 ESYT1Q9BSJ8 1104 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 PAK6Q9NQU5 681 aaPredicted RBP21.47■■□□□ 1.03
CLN3-243ENST00000635973 CTNNA3Q9UI47 895 aa21.47■■□□□ 1.03
CLN3-243ENST00000635973 PRDM1O75626 825 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 AKR1B1P15121 316 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 VCAM1P19320 739 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 WDR78Q5VTH9 848 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 CATSPERGQ6ZRH7 1159 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 TMEM179Q6ZVK1 233 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 TRMT44Q8IYL2 757 aaKnown RBP21.46■■□□□ 1.03
CLN3-243ENST00000635973 TOMM22Q9NS69 142 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 COLQQ9Y215 455 aaPredicted RBP21.46■■□□□ 1.03
CLN3-243ENST00000635973 RABGAP1Q9Y3P9 1069 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 RPTORQ8N122 1335 aa21.46■■□□□ 1.03
CLN3-243ENST00000635973 ZNF213O14771 459 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 RASA1P20936 1047 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 IMMTQ16891 758 aaKnown RBP21.45■■□□□ 1.02
CLN3-243ENST00000635973 Q3C1V9 767 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 PLEKHH3Q7Z736 793 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 RPAP3Q9H6T3 665 aaPredicted RBP21.45■■□□□ 1.02
CLN3-243ENST00000635973 ANAPC4Q9UJX5 808 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 NR2E3Q9Y5X4 410 aa21.45■■□□□ 1.02
CLN3-243ENST00000635973 XRCC5P13010 732 aaKnown RBP21.44■■□□□ 1.02
CLN3-243ENST00000635973 ZKSCAN1P17029 563 aaPredicted RBP21.44■■□□□ 1.02
CLN3-243ENST00000635973 RGS2P41220 211 aa21.44■■□□□ 1.02
CLN3-243ENST00000635973 FXR1P51114 621 aaKnown RBP eCLIP21.44■■□□□ 1.02
CLN3-243ENST00000635973 GPR142Q7Z601 462 aa21.44■■□□□ 1.02
CLN3-243ENST00000635973 PORCNQ9H237 461 aa21.44■■□□□ 1.02
CLN3-243ENST00000635973 ARHGEF10LQ9HCE6 1279 aa21.44■■□□□ 1.02
CLN3-243ENST00000635973 GUCY1A2P33402 732 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 ICA1Q05084 483 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 UBE2Q1Q7Z7E8 422 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 TRIB2Q92519 343 aa21.43■■□□□ 1.02
CLN3-243ENST00000635973 TANGO6Q9C0B7 1094 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms