RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 CSRNP1Q96S65 589 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 ARFGAP3Q9NP61 516 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 KDM5CP41229 1560 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 POLA2Q14181 598 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 NOLC1Q14978 699 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 FAM160B1Q5W0V3 765 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 GPBP1Q86WP2 473 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 TICAM2Q86XR7 235 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 GPR161Q8N6U8 529 aaKnown RBP12.64□□□□□ -0.39
CLIP1-219ENST00000620786 RDH13Q8NBN7 331 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 SMC6Q96SB8 1091 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 PNMA2Q9UL42 364 aa12.64□□□□□ -0.39
CLIP1-219ENST00000620786 BLMP54132 1417 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 TLDC2A0PJX2 215 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 IL6STP40189 918 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SUPT20HL1Q3ZLR7 823 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SESTD1Q86VW0 696 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SMC1BQ8NDV3 1235 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 PPANQ9NQ55 473 aaKnown RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 PPP2R5DQ14738 602 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 TMC4Q7Z404 712 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SLFN12Q8IYM2 578 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 UBLCP1Q8WVY7 318 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 NELFBQ8WX92 580 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 ADPGKQ9BRR6 497 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 CTTNBP2NLQ9P2B4 639 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 ZBTB1Q9Y2K1 713 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 METP08581 1390 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 LRMPQ12912 555 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 MCM6Q14566 821 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 CCDC93Q567U6 631 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 CYP26C1Q6V0L0 522 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 PNMA1Q8ND90 353 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SRRTQ9BXP5 876 aaKnown RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 SUGCTQ9HAC7 445 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 THRAP3Q9Y2W1 955 aaKnown RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 TUBB4AP04350 444 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 ATF7P17544 494 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 GABPB2Q8TAK5 448 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-219ENST00000620786 PRKAG2Q9UGJ0 569 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 ALDH3A1P30838 453 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 BLIDQ8IZY5 108 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 TTLL3Q9Y4R7 772 aa12.63□□□□□ -0.39
CLIP1-219ENST00000620786 TNNC2P02585 160 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 RHOXF2BP0C7M4 288 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 CYP2J2P51589 502 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 USP14P54578 494 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 RHOXF2Q9BQY4 288 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 MYOM2P54296 1465 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 MKRN3Q13064 507 aaKnown RBP12.62□□□□□ -0.39
CLIP1-219ENST00000620786 POSTNQ15063 836 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 TRIM7Q9C029 511 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 DDX25Q9UHL0 483 aaKnown RBP12.62□□□□□ -0.39
CLIP1-219ENST00000620786 WDR17Q8IZU2 1322 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 TECP42680 631 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 BEND3Q5T5X7 828 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 PLA2G4DQ86XP0 818 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 PRIMPOLQ96LW4 560 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 IWS1Q96ST2 819 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 NUP58Q9BVL2 599 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 AP5M1Q9H0R1 490 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 ZNF335Q9H4Z2 1342 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-219ENST00000620786 KLRF2D3W0D1 207 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 K7ENM7 598 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 TMOD1P28289 359 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 CCDC6Q16204 474 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 ARHGAP44Q17R89 818 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 ZNF365Q70YC5 407 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 MMS19Q96T76 1030 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 PRDM10Q9NQV6 1147 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 NRBP2Q9NSY0 501 aa12.62□□□□□ -0.39
CLIP1-219ENST00000620786 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 VAV2P52735 878 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 IFRD2Q12894 506 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 GPIHBP1Q8IV16 184 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 ATRIPQ8WXE1 791 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 GPKOWQ92917 476 aaPredicted RBP eCLIP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 MRRFQ96E11 262 aaKnown RBP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 STIM2Q9P246 746 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 ANAPC4Q9UJX5 808 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 SEMA3EO15041 775 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 RAD17O75943 681 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 POLGP54098 1239 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 GSDMBQ8TAX9 411 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 TAB2Q9NYJ8 693 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 SWAP70Q9UH65 585 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 ZEB2O60315 1214 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 SYT10Q6XYQ8 523 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 CEP128Q6ZU80 1094 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 SPICE1Q8N0Z3 855 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 IPO4Q8TEX9 1081 aaKnown RBP12.61□□□□□ -0.39
CLIP1-219ENST00000620786 MYO1AQ9UBC5 1043 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 KIF24Q5T7B8 1368 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 TNKSO95271 1327 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 ZNF202O95125 648 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 ITIH3Q06033 890 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 SLC9C1Q4G0N8 1177 aa12.61□□□□□ -0.39
CLIP1-219ENST00000620786 PCDHB13Q9Y5F0 798 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms