RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ARHGEF5Q12774 1597 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 UGGT1Q9NYU2 1555 aa15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CALUO43852 315 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-212ENST00000616140 CFBP00751 764 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SMTNP53814 917 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 PAK2Q13177 524 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 MORC3Q14149 939 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 WDR44Q5JSH3 913 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SFMBT2Q5VUG0 894 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 B4GALNT4Q76KP1 1039 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SMC6Q96SB8 1091 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 MAST3O60307 1309 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 GCNT3O95395 438 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 NBPF14Q5TI25 921 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 CPXCR1Q8N123 301 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SLAIN2Q9P270 581 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 DDX41Q9UJV9 622 aaKnown RBP15.56■□□□□ 0.08
CPSF1-212ENST00000616140 UTP11Q9Y3A2 253 aaKnown RBP15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SCG2P13521 617 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 SPATA1Q5VX52 437 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 ZNF365Q70YC5 407 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 PEX26Q7Z412 305 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 MYCT1Q8N699 235 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 PCDHB13Q9Y5F0 798 aa15.56■□□□□ 0.08
CPSF1-212ENST00000616140 DNM2P50570 870 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 KIFAP3Q92845 792 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 RCOR1Q9UKL0 485 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 FAM170AA1A519 330 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 DDX39AO00148 427 aaKnown RBP15.55■□□□□ 0.08
CPSF1-212ENST00000616140 TECP42680 631 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 PPFIA1Q13136 1202 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 SETDB1Q15047 1291 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 MFSD14BQ5SR56 506 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 C11orf57Q6ZUT1 292 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-212ENST00000616140 ARHGEF25Q86VW2 580 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 SREK1Q8WXA9 508 aaKnown RBP15.55■□□□□ 0.08
CPSF1-212ENST00000616140 MRPL44Q9H9J2 332 aaKnown RBP15.55■□□□□ 0.08
CPSF1-212ENST00000616140 ARHGEF10LQ9HCE6 1279 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 YEATS2Q9ULM3 1422 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 FAM98CQ17RN3 349 aaKnown RBP15.55■□□□□ 0.08
CPSF1-212ENST00000616140 PI16Q6UXB8 463 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 RUFY4Q6ZNE9 571 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 MSANTD4Q8NCY6 345 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 GPKOWQ92917 476 aaPredicted RBP eCLIP15.55■□□□□ 0.081e-6■□□□□ 10.4
CPSF1-212ENST00000616140 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.55■□□□□ 0.086e-6■■■■□ 21.5
CPSF1-212ENST00000616140 B4DLN1 442 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 KLRF2D3W0D1 207 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 FERP16591 822 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 BRD3Q15059 726 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 TXNDC16Q9P2K2 825 aa15.55■□□□□ 0.08
CPSF1-212ENST00000616140 CARMIL3Q8ND23 1372 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 GOLGA8HP0CJ92 632 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 DPP8Q6V1X1 898 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 RDH13Q8NBN7 331 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 SYNMO15061 1565 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 CEP170Q5SW79 1584 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 PRR36Q9H6K5 1346 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 EFCAB8A8MWE9 144 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 H7C1D1 291 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 HGSO14964 777 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 STX10O60499 249 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 ATP2A2P16615 1042 aaKnown RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 INPP5BP32019 993 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 UBL4BQ8N7F7 174 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 RPGRIP1Q96KN7 1286 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 ASIC3Q9UHC3 531 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 PSDA5PKW4 1024 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 SASH1O94885 1247 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 ERCC5P28715 1186 aaPredicted RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 SYMPKQ92797 1274 aaKnown RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 MRRFQ96E11 262 aaKnown RBP15.54■□□□□ 0.08
CPSF1-212ENST00000616140 NT5C3AQ9H0P0 336 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 POLR3EQ9NVU0 708 aa15.54■□□□□ 0.08
CPSF1-212ENST00000616140 PTPN21Q16825 1174 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 WHAMMP3Q1A5X7 153 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 TTC16Q8NEE8 873 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 TRIM58Q8NG06 486 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 HAUS4Q9H6D7 363 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 GPR108Q9NPR9 543 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 GTF2IP78347 998 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 LINC00301Q8NCQ3 95 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 TBC1D22AQ8WUA7 517 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 CABS1Q96KC9 395 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 NUCKS1Q9H1E3 243 aaKnown RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 GTPBP6O43824 516 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 UAP1Q16222 522 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 ARHGAP44Q17R89 818 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 KRT71Q3SY84 523 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 PAXIP1Q6ZW49 1069 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 FNBP4Q8N3X1 1017 aaPredicted RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 ASAP1Q9ULH1 1129 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 PCDHA12Q9UN75 941 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 ADGBQ8N7X0 1667 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 PTPN12Q05209 780 aaKnown RBP15.53■□□□□ 0.08
CPSF1-212ENST00000616140 CHRNDQ07001 517 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 SF3A3Q12874 501 aaKnown RBP eCLIP15.53■□□□□ 0.084e-7■■■■■ 48.3
CPSF1-212ENST00000616140 NECTIN1Q15223 517 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 NSMFQ6X4W1 530 aa15.53■□□□□ 0.08
CPSF1-212ENST00000616140 MYOCDQ8IZQ8 938 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms