RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 KDM4AO75164 1064 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 LPAR1Q92633 364 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 KRT23Q9C075 422 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 ASCC2Q9H1I8 757 aaPredicted RBP19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 PNMA3Q9UL41 463 aa19.54■□□□□ 0.72
CCDC28A-202ENST00000611852 E7EWF7 191 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 NOVP48745 357 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 PPP4R3BQ5MIZ7 849 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 STOX1Q6ZVD7 989 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 SPICE1Q8N0Z3 855 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 GOPCQ9HD26 462 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 SYNPO2Q9UMS6 1093 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 STX8Q9UNK0 236 aa19.53■□□□□ 0.72
CCDC28A-202ENST00000611852 SLC27A2O14975 620 aa19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 REC8O95072 547 aa19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 OSBPP22059 807 aa19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 CREB3L3Q68CJ9 461 aa19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 RPAP3Q9H6T3 665 aaPredicted RBP19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 ZSWIM5Q9P217 1185 aa19.52■□□□□ 0.72
CCDC28A-202ENST00000611852 USP17L15C9J2P7 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L13C9JLJ4 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L11C9JVI0 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L18D6R9N7 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L22D6RA61 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L17D6RBQ6 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L19D6RCP7 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L20D6RJB6 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 IRX3P78415 501 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 USP17L24Q0WX57 530 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 TRDNQ13061 729 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 C17orf99Q6UX52 265 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 CATSPERGQ6ZRH7 1159 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 LRRC47Q8N1G4 583 aaKnown RBP19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 SMCR8Q8TEV9 937 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 ZNF296Q8WUU4 475 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 PRDM10Q9NQV6 1147 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 CASP8AP2Q9UKL3 1982 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 F5H6K3 240 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 KLRC3Q07444 240 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 RCSD1Q6JBY9 416 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 P2RX7Q99572 595 aaKnown RBP19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 ZKSCAN3Q9BRR0 538 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 CPA4Q9UI42 421 aa19.51■□□□□ 0.71
CCDC28A-202ENST00000611852 WDR46O15213 610 aaKnown RBP19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 RAD21O60216 631 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 NDUFB10O96000 172 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 RNF20Q5VTR2 975 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 IQCA1Q86XH1 822 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 GMCL1P1Q8NEA9 526 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 NCOA7Q8NI08 942 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 TTC14Q96N46 770 aa19.5■□□□□ 0.71
CCDC28A-202ENST00000611852 FKTNO75072 461 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 BCRP11274 1271 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 SP3Q02447 781 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 CYB5R4Q7L1T6 521 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 RALYLQ86SE5 291 aaKnown RBP19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 ZSCAN10Q96SZ4 725 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 TMEM47Q9BQJ4 181 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 TANGO6Q9C0B7 1094 aa19.49■□□□□ 0.71
CCDC28A-202ENST00000611852 TOP1P11387 765 aaKnown RBP19.48■□□□□ 0.71
CCDC28A-202ENST00000611852 GCLCP48506 637 aaPredicted RBP19.48■□□□□ 0.71
CCDC28A-202ENST00000611852 HERVK_113P62684 666 aa19.48■□□□□ 0.71
CCDC28A-202ENST00000611852 CCDC178Q5BJE1 867 aa19.48■□□□□ 0.71
CCDC28A-202ENST00000611852 DGKHQ86XP1 1220 aa19.48■□□□□ 0.71
CCDC28A-202ENST00000611852 EPB41L2O43491 1005 aaKnown RBP19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 FAM83BQ5T0W9 1011 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 SLFN13Q68D06 897 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 MB21D2Q8IYB1 491 aaPredicted RBP19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 RASEFQ8IZ41 740 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 ANKRD13CQ8N6S4 541 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 NUP88Q99567 741 aaPredicted RBP19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 UBAC1Q9BSL1 405 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 TNKSO95271 1327 aa19.47■□□□□ 0.71
CCDC28A-202ENST00000611852 RLFQ13129 1914 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 HSPA4P34932 840 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 COG2Q14746 738 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 TSGA10IPQ3SY00 556 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 POTEEQ6S8J3 1075 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 ENAHQ8N8S7 591 aaPredicted RBP19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 ANKS1AQ92625 1134 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 SPDYE16A6NNV3 312 aaPredicted RBP19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 FLOT1O75955 427 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 FAM110CQ1W6H9 321 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 LBX2Q6XYB7 198 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 KCNB2Q92953 911 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 GMCL1Q96IK5 515 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 USP26Q9BXU7 913 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 HOXC10Q9NYD6 342 aa19.46■□□□□ 0.71
CCDC28A-202ENST00000611852 ZKSCAN1P17029 563 aaPredicted RBP19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 MCCP23508 829 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 ANTXR2P58335 489 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 LACTBP83111 547 aaPredicted RBP19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 COL9A3Q14050 684 aaPredicted RBP19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 SEC23AQ15436 765 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 GTF3C2Q8WUA4 911 aaPredicted RBP19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 TXNRD2Q9NNW7 524 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 FBXO28Q9NVF7 368 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 RBPJLQ9UBG7 517 aa19.45■□□□□ 0.7
CCDC28A-202ENST00000611852 PARP14Q460N5 1801 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 PEX10O60683 326 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms