RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 GPR142Q7Z601 462 aa31.16■■■□□ 2.58
PNKP-216ENST00000601816 PLEKHH3Q7Z736 793 aa31.16■■■□□ 2.58
PNKP-216ENST00000601816 U2AF1L4Q8WU68 220 aaKnown RBP31.16■■■□□ 2.58
PNKP-216ENST00000601816 KANSL2Q9H9L4 492 aa31.16■■■□□ 2.58
PNKP-216ENST00000601816 STAP2Q9UGK3 403 aa31.16■■■□□ 2.58
PNKP-216ENST00000601816 ROBO3Q96MS0 1386 aa31.16■■■□□ 2.58
PNKP-216ENST00000601816 PLXNB2O15031 1838 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 ATP2B2Q01814 1243 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 COG2Q14746 738 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 ZMYM1Q5SVZ6 1142 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 SEC62Q99442 399 aaKnown RBP31.15■■■□□ 2.58
PNKP-216ENST00000601816 VCPKMTQ9H867 229 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 MKNK2Q9HBH9 465 aa31.15■■■□□ 2.58
PNKP-216ENST00000601816 PATL2C9JE40 543 aaKnown RBP31.14■■■□□ 2.58
PNKP-216ENST00000601816 PDE1AP54750 535 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 KIAA1755Q5JYT7 1200 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 STK11IPQ8N1F8 1099 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 NACAP1Q9BZK3 213 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 RWDD1Q9H446 243 aaPredicted RBP31.14■■■□□ 2.58
PNKP-216ENST00000601816 HOXC10Q9NYD6 342 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 BTBD7Q9P203 1132 aa31.14■■■□□ 2.58
PNKP-216ENST00000601816 SGPL1O95470 568 aa31.13■■■□□ 2.57
PNKP-216ENST00000601816 XRCC5P13010 732 aaKnown RBP31.13■■■□□ 2.57
PNKP-216ENST00000601816 EEF2P13639 858 aaKnown RBP31.13■■■□□ 2.57
PNKP-216ENST00000601816 SPICE1Q8N0Z3 855 aa31.13■■■□□ 2.57
PNKP-216ENST00000601816 TRIB2Q92519 343 aa31.13■■■□□ 2.57
PNKP-216ENST00000601816 PAK6Q9NQU5 681 aaPredicted RBP31.13■■■□□ 2.57
PNKP-216ENST00000601816 RASA1P20936 1047 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 RGS2P41220 211 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 WDR78Q5VTH9 848 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 IFNL3Q8IZI9 196 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 EVI5LQ96CN4 794 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 DEFB118Q96PH6 123 aa31.12■■■□□ 2.57
PNKP-216ENST00000601816 WDR46O15213 610 aaKnown RBP31.11■■■□□ 2.57
PNKP-216ENST00000601816 MORN1Q5T089 497 aa31.11■■■□□ 2.57
PNKP-216ENST00000601816 TRMT44Q8IYL2 757 aaKnown RBP31.11■■■□□ 2.57
PNKP-216ENST00000601816 EXOC6Q8TAG9 804 aa31.11■■■□□ 2.57
PNKP-216ENST00000601816 USP6NLQ92738 828 aa31.11■■■□□ 2.57
PNKP-216ENST00000601816 LNPKQ9C0E8 428 aa31.11■■■□□ 2.57
PNKP-216ENST00000601816 XRN2Q9H0D6 950 aaKnown RBP eCLIP31.11■■■□□ 2.57
PNKP-216ENST00000601816 ZNF287Q9HBT7 754 aa31.11■■■□□ 2.57
PNKP-216ENST00000601816 CAPN2P17655 700 aa31.1■■■□□ 2.57
PNKP-216ENST00000601816 TRIM32Q13049 653 aa31.1■■■□□ 2.57
PNKP-216ENST00000601816 SMC5Q8IY18 1101 aa31.1■■■□□ 2.57
PNKP-216ENST00000601816 GNL3Q9BVP2 549 aaKnown RBP eCLIP31.1■■■□□ 2.57
PNKP-216ENST00000601816 FLOT1O75955 427 aa31.09■■■□□ 2.57
PNKP-216ENST00000601816 ZKSCAN1P17029 563 aaPredicted RBP31.09■■■□□ 2.57
PNKP-216ENST00000601816 APBA2Q99767 749 aa31.09■■■□□ 2.57
PNKP-216ENST00000601816 NAPBQ9H115 298 aa31.09■■■□□ 2.57
PNKP-216ENST00000601816 GOPCQ9HD26 462 aa31.09■■■□□ 2.57
PNKP-216ENST00000601816 HMX1Q9NP08 348 aaPredicted RBP31.09■■■□□ 2.57
PNKP-216ENST00000601816 RPTORQ8N122 1335 aa31.08■■■□□ 2.57
PNKP-216ENST00000601816 FARP2O94887 1054 aaPredicted RBP31.08■■■□□ 2.57
PNKP-216ENST00000601816 TFRCP02786 760 aaKnown RBP31.08■■■□□ 2.57
PNKP-216ENST00000601816 DSG3P32926 999 aa31.08■■■□□ 2.57
PNKP-216ENST00000601816 MAP2K5Q13163 448 aa31.08■■■□□ 2.57
PNKP-216ENST00000601816 MB21D1Q8N884 522 aa31.08■■■□□ 2.57
PNKP-216ENST00000601816 IVNS1ABPQ9Y6Y0 642 aa31.08■■■□□ 2.57
PNKP-216ENST00000601816 B4GALNT3Q6L9W6 998 aa31.07■■■□□ 2.56
PNKP-216ENST00000601816 UBE2Q1Q7Z7E8 422 aa31.07■■■□□ 2.56
PNKP-216ENST00000601816 ZNF444Q8N0Y2 327 aaPredicted RBP31.07■■■□□ 2.56
PNKP-216ENST00000601816 GREB1LQ9C091 1923 aaPredicted RBP31.06■■■□□ 2.56
PNKP-216ENST00000601816 SLC15A5A6NIM6 579 aa31.06■■■□□ 2.56
PNKP-216ENST00000601816 RAD21O60216 631 aa31.06■■■□□ 2.56
PNKP-216ENST00000601816 PTPREP23469 700 aa31.06■■■□□ 2.56
PNKP-216ENST00000601816 CRISPLD2Q9H0B8 497 aa31.06■■■□□ 2.56
PNKP-216ENST00000601816 A0A0G2JMZ2 1700 aa31.06■■■□□ 2.56
PNKP-216ENST00000601816 PRDM1O75626 825 aa31.05■■■□□ 2.56
PNKP-216ENST00000601816 SLC3A2P08195 630 aaKnown RBP31.05■■■□□ 2.56
PNKP-216ENST00000601816 PRKAR2AP13861 404 aaKnown RBP31.05■■■□□ 2.56
PNKP-216ENST00000601816 MAP3K21Q5TCX8 1036 aa31.05■■■□□ 2.56
PNKP-216ENST00000601816 SAMD1Q6SPF0 538 aaPredicted RBP31.05■■■□□ 2.56
PNKP-216ENST00000601816 CCDC129Q6ZRS4 1044 aa31.05■■■□□ 2.56
PNKP-216ENST00000601816 ATG4CQ96DT6 458 aa31.05■■■□□ 2.56
PNKP-216ENST00000601816 MOV10L1Q9BXT6 1211 aaKnown RBP31.05■■■□□ 2.56
PNKP-216ENST00000601816 SPATC1LQ9H0A9 340 aa31.05■■■□□ 2.56
PNKP-216ENST00000601816 RLFQ13129 1914 aa31.04■■■□□ 2.56
PNKP-216ENST00000601816 IGHDP01880 384 aa31.04■■■□□ 2.56
PNKP-216ENST00000601816 CCL14Q16627 93 aa31.04■■■□□ 2.56
PNKP-216ENST00000601816 NYAP2Q9P242 653 aa31.04■■■□□ 2.56
PNKP-216ENST00000601816 SUPT16HQ9Y5B9 1047 aaKnown RBP31.04■■■□□ 2.56
PNKP-216ENST00000601816 PDE4BQ07343 736 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 PPARAQ07869 468 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 GRB14Q14449 540 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 CHD1LQ86WJ1 897 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 SHCBP1Q8NEM2 672 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 HTATIP2Q9BUP3 242 aa31.03■■■□□ 2.56
PNKP-216ENST00000601816 PLS1Q14651 629 aa31.02■■■□□ 2.56
PNKP-216ENST00000601816 HELLSQ9NRZ9 838 aa31.02■■■□□ 2.56
PNKP-216ENST00000601816 IGKV6D-41A0A0C4DH26 115 aa31.01■■■□□ 2.55
PNKP-216ENST00000601816 FAM83BQ5T0W9 1011 aa31.01■■■□□ 2.55
PNKP-216ENST00000601816 TICAM2Q86XR7 235 aa31.01■■■□□ 2.55
PNKP-216ENST00000601816 FBXO28Q9NVF7 368 aa31.01■■■□□ 2.55
PNKP-216ENST00000601816 TRIM6-TRIM34B2RNG4 842 aa31■■■□□ 2.55
PNKP-216ENST00000601816 FOXP2O15409 715 aa31■■■□□ 2.55
PNKP-216ENST00000601816 ERCC3P19447 782 aa31■■■□□ 2.55
PNKP-216ENST00000601816 NUCB1Q02818 461 aa31■■■□□ 2.55
PNKP-216ENST00000601816 CACNB2Q08289 660 aaPredicted RBP31■■■□□ 2.55
PNKP-216ENST00000601816 DPF3Q92784 378 aa31■■■□□ 2.55
PNKP-216ENST00000601816 CLIP2Q9UDT6 1046 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms