RNA–Protein interactions for RNA: ENST00000601614.6

SSBP4-211, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 628 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-211ENST00000601614 ATF7IPQ6VMQ6 1270 aa19.61■□□□□ 0.73
SSBP4-211ENST00000601614 SERPINB13Q9UIV8 391 aa19.61■□□□□ 0.73
SSBP4-211ENST00000601614 FPGT-TNNI3KV9GXZ4 949 aa19.61■□□□□ 0.73
SSBP4-211ENST00000601614 GRIN2CQ14957 1233 aa19.6■□□□□ 0.73
SSBP4-211ENST00000601614 CERKLQ49MI3 558 aaPredicted RBP19.6■□□□□ 0.73
SSBP4-211ENST00000601614 C1orf53Q5VUE5 145 aa19.6■□□□□ 0.73
SSBP4-211ENST00000601614 SYMPKQ92797 1274 aaKnown RBP19.6■□□□□ 0.73
SSBP4-211ENST00000601614 EHD4Q9H223 541 aa19.6■□□□□ 0.73
SSBP4-211ENST00000601614 RAPGEFL1Q9UHV5 662 aa19.6■□□□□ 0.73
SSBP4-211ENST00000601614 A0A1W2PRG0 241 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 ERCC3P19447 782 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 COL9A1P20849 921 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 PLCD1P51178 756 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 RARSP54136 660 aaKnown RBP19.59■□□□□ 0.73
SSBP4-211ENST00000601614 EVX2Q03828 476 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 CCDC158Q5M9N0 1113 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 RNPC3Q96LT9 517 aaKnown RBP19.59■□□□□ 0.73
SSBP4-211ENST00000601614 SPATC1LQ9H0A9 340 aa19.59■□□□□ 0.73
SSBP4-211ENST00000601614 TMEM265A0A087WTH1 108 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 GNAI2P04899 355 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 CT47B1P0C2W7 299 aaPredicted RBP19.58■□□□□ 0.72
SSBP4-211ENST00000601614 USP5P45974 858 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 SEPT2Q15019 361 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 KIAA1755Q5JYT7 1200 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 ZNF512BQ96KM6 892 aaPredicted RBP19.58■□□□□ 0.72
SSBP4-211ENST00000601614 GPR108Q9NPR9 543 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 MYH8P13535 1937 aa19.58■□□□□ 0.72
SSBP4-211ENST00000601614 STRNO43815 780 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 COG2Q14746 738 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 TJAP1Q5JTD0 557 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 SHCBP1Q8NEM2 672 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 ARHGAP45Q92619 1136 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 TLR7Q9NYK1 1049 aaKnown RBP19.57■□□□□ 0.72
SSBP4-211ENST00000601614 PHF24Q9UPV7 400 aa19.57■□□□□ 0.72
SSBP4-211ENST00000601614 IDH1O75874 414 aaKnown RBP19.56■□□□□ 0.72
SSBP4-211ENST00000601614 CLTBP09497 229 aa19.56■□□□□ 0.72
SSBP4-211ENST00000601614 MAGEB6Q8N7X4 407 aa19.56■□□□□ 0.72
SSBP4-211ENST00000601614 MAML3Q96JK9 1138 aa19.56■□□□□ 0.72
SSBP4-211ENST00000601614 CABP5Q9NP86 173 aa19.56■□□□□ 0.72
SSBP4-211ENST00000601614 DBNLQ9UJU6 430 aaKnown RBP19.56■□□□□ 0.72
SSBP4-211ENST00000601614 TACC3Q9Y6A5 838 aa19.56■□□□□ 0.72
SSBP4-211ENST00000601614 TNFRSF10AO00220 468 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 KIAA0355O15063 1070 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 DNAJB2P25686 324 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 GABPAQ06546 454 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 POLA2Q14181 598 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 TANGO6Q9C0B7 1094 aa19.55■□□□□ 0.72
SSBP4-211ENST00000601614 PGK1P00558 417 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 TRIM27P14373 513 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 TTC6Q86TZ1 520 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 ANTXR1Q9H6X2 564 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 HOXC10Q9NYD6 342 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 NCOR1O75376 2440 aa19.54■□□□□ 0.72
SSBP4-211ENST00000601614 PQBP1O60828 265 aaKnown RBP19.53■□□□□ 0.72
SSBP4-211ENST00000601614 IGSF3O75054 1194 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 RAG1P15918 1043 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 TAL1P17542 331 aaPredicted RBP19.53■□□□□ 0.72
SSBP4-211ENST00000601614 NCAPG2Q86XI2 1143 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 LENG1Q96BZ8 264 aaPredicted RBP19.53■□□□□ 0.72
SSBP4-211ENST00000601614 ATG4CQ96DT6 458 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 RIOK1Q9BRS2 568 aaKnown RBP19.53■□□□□ 0.72
SSBP4-211ENST00000601614 ZNF576Q9H609 170 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 XPNPEP3Q9NQH7 507 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 GBF1Q92538 1859 aa19.53■□□□□ 0.72
SSBP4-211ENST00000601614 A0A1W2PQ45 241 aaPredicted RBP19.52■□□□□ 0.72
SSBP4-211ENST00000601614 A0A1W2PQY0 241 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 DSG3P32926 999 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 FPGSQ05932 587 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 PLS1Q14651 629 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 CLEC10AQ8IUN9 316 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 CCDC8Q9H0W5 538 aaPredicted RBP19.52■□□□□ 0.72
SSBP4-211ENST00000601614 MROH8Q9H579 483 aa19.52■□□□□ 0.72
SSBP4-211ENST00000601614 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.51■□□□□ 0.71
SSBP4-211ENST00000601614 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.51■□□□□ 0.71
SSBP4-211ENST00000601614 FAAP100Q0VG06 881 aa19.51■□□□□ 0.71
SSBP4-211ENST00000601614 SIAH1Q8IUQ4 282 aa19.51■□□□□ 0.71
SSBP4-211ENST00000601614 ABRAQ8N0Z2 381 aa19.51■□□□□ 0.71
SSBP4-211ENST00000601614 SLC44A5Q8NCS7 719 aa19.51■□□□□ 0.71
SSBP4-211ENST00000601614 SSH3Q8TE77 659 aa19.51■□□□□ 0.71
SSBP4-211ENST00000601614 EAF2Q96CJ1 260 aaPredicted RBP19.51■□□□□ 0.71
SSBP4-211ENST00000601614 BAZ2AQ9UIF9 1905 aaKnown RBP19.51■□□□□ 0.71
SSBP4-211ENST00000601614 MPHOSPH10O00566 681 aaKnown RBP19.5■□□□□ 0.71
SSBP4-211ENST00000601614 RARBP10826 455 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 PBX2P40425 430 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 OS9Q13438 667 aaPredicted RBP19.5■□□□□ 0.71
SSBP4-211ENST00000601614 TMEM132BQ14DG7 1078 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 CERS3Q8IU89 383 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 MB21D1Q8N884 522 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 CLUAP1Q96AJ1 413 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.5■□□□□ 0.712e-9■□□□□ 11.2
SSBP4-211ENST00000601614 TMEM39AQ9NV64 488 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 SLC5A4Q9NY91 659 aa19.5■□□□□ 0.71
SSBP4-211ENST00000601614 ROBO3Q96MS0 1386 aa19.49■□□□□ 0.71
SSBP4-211ENST00000601614 GRXCR1A8MXD5 290 aa19.49■□□□□ 0.71
SSBP4-211ENST00000601614 ADAMTS4O75173 837 aa19.49■□□□□ 0.71
SSBP4-211ENST00000601614 SURF6O75683 361 aaKnown RBP19.49■□□□□ 0.71
SSBP4-211ENST00000601614 BCAR3O75815 825 aa19.49■□□□□ 0.71
SSBP4-211ENST00000601614 FLOT1O75955 427 aa19.49■□□□□ 0.71
SSBP4-211ENST00000601614 POLR3DP05423 398 aaPredicted RBP19.49■□□□□ 0.71
SSBP4-211ENST00000601614 PGK2P07205 417 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms