RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CDKL5	O76039	1030 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	TPM2	P07951	284 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	RXRA	P19793	462 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	TROAP	Q12815	778 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	FANCB	Q8NB91	859 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	CEP95	Q96GE4	821 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	DEFB129	Q9H1M3	183 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	MTMR4	Q9NYA4	1195 aa		13.54	□□□□□ -0.24
VRK3-223	ENST00000601341	PTPDC1	A2A3K4	754 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	GLTPD2	A6NH11	291 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	JAK2	O60674	1132 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CTDNEP1	O95476	244 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	SLURP2	P0DP57	97 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	ADD1	P35611	737 aa	Known RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	NOV	P48745	357 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	RTN1	Q16799	776 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	ANGEL2	Q5VTE6	544 aa	Known RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CCDC144CP	Q8IYA2	1237 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	PNMA1	Q8ND90	353 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	DDX19A	Q9NUU7	478 aa	Known RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	PGAP2	Q9UHJ9	254 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	IGKV6D-41	A0A0C4DH26	115 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CAVIN2	O95810	425 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CCDC192	P0DO97	292 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	TOP1	P11387	765 aa	Known RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CDC27	P30260	824 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	HIRA	P54198	1017 aa	Predicted RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CDC37L1	Q7L3B6	337 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	MAP3K14	Q99558	947 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	TMEM47	Q9BQJ4	181 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	RBM28	Q9NW13	759 aa	Known RBP	13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	CFAP45	Q9UL16	551 aa		13.53	□□□□□ -0.24
VRK3-223	ENST00000601341	TTLL1	O95922	423 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	MAP3K10	Q02779	954 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	ABCB5	Q2M3G0	1257 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	RBM43	Q6ZSC3	357 aa	Known RBP	13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	TMEM179	Q6ZVK1	233 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	CTCFL	Q8NI51	663 aa	Predicted RBP	13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	HOOK2	Q96ED9	719 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	DDX11	Q96FC9	970 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	TEPSIN	Q96N21	525 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	KANSL2	Q9H9L4	492 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	CABP5	Q9NP86	173 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	GGA3	Q9NZ52	723 aa		13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.52	□□□□□ -0.25
VRK3-223	ENST00000601341	PITPNM2	Q9BZ72	1349 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	DTNB	O60941	627 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	TPM3	P06753	285 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	IFNAR1	P17181	557 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	KIF5B	P33176	963 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	NTRK3	Q16288	839 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	CDAN1	Q8IWY9	1227 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	RNF214	Q8ND24	703 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	SCAF8	Q9UPN6	1271 aa	Known RBP	13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	PPP2R3B	Q9Y5P8	575 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	MYH15	Q9Y2K3	1946 aa		13.51	□□□□□ -0.25
VRK3-223	ENST00000601341	USP50	Q70EL3	339 aa	Predicted RBP	13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	MIGA2	Q7L4E1	593 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	ORC3	Q9UBD5	711 aa	Predicted RBP	13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	CLIP2	Q9UDT6	1046 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	SIPA1L1	O43166	1804 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	IQCA1L	A6NCM1	817 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	DCAF8L1	A6NGE4	600 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	GDF11	O95390	407 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	MAP3K11	Q16584	847 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	TRIM22	Q8IYM9	498 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	LEO1	Q8WVC0	666 aa	Predicted RBP	13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	SPATA32	Q96LK8	384 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	NYAP2	Q9P242	653 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	USP25	Q9UHP3	1055 aa		13.5	□□□□□ -0.25
VRK3-223	ENST00000601341	GOLGA6L4	A6NEF3	574 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	GH2	P01242	217 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	FDPS	P14324	419 aa	Known RBP	13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	EPHX2	P34913	555 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	GNAQ	P50148	359 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	SSRP1	Q08945	709 aa	Known RBP	13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	REST	Q13127	1097 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	SEPT2	Q15019	361 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	DCAF15	Q66K64	600 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	DCPS	Q96C86	337 aa	Known RBP	13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	NUP62CL	Q9H1M0	184 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	STK36	Q9NRP7	1315 aa		13.49	□□□□□ -0.25
VRK3-223	ENST00000601341	PPFIA3	O75145	1194 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	FMNL1	O95466	1100 aa	Predicted RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	CAP2	P40123	477 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	ATP2B2	Q01814	1243 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	ICA1	Q05084	483 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	RRP1B	Q14684	758 aa	Known RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	GRM4	Q14833	912 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	ZC3H15	Q8WU90	426 aa	Known RBP	13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	WASF1	Q92558	559 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	PHKB	Q93100	1093 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341	MKL1	Q969V6	931 aa		13.48	□□□□□ -0.25
VRK3-223	ENST00000601341		H3BQV1	296 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms