RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FAM237AA0A1B0GTK4 181 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 PDE6AP16499 860 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 TDO2P48775 406 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 E2F4Q16254 413 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 MAGEB6Q8N7X4 407 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 IQSEC3Q9UPP2 1182 aaPredicted RBP20.73■□□□□ 0.91
UPF1-210ENST00000600689 COL16A1Q07092 1604 aaPredicted RBP20.72■□□□□ 0.91
UPF1-210ENST00000600689 SART3Q15020 963 aaKnown RBP20.72■□□□□ 0.91
UPF1-210ENST00000600689 RASGRP2Q7LDG7 609 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 MSANTD4Q8NCY6 345 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 PAGE5Q96GU1 130 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 PSD3Q9NYI0 1048 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 COL14A1Q05707 1796 aaKnown RBP20.72■□□□□ 0.91
UPF1-210ENST00000600689 MINDY4BA8MYZ0 360 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 FMNL1O95466 1100 aaPredicted RBP20.72■□□□□ 0.91
UPF1-210ENST00000600689 KRT31Q15323 416 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 RILPL1Q5EBL4 403 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 CAGE1Q8TC20 777 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 EHD4Q9H223 541 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 RAB21Q9UL25 225 aa20.72■□□□□ 0.91
UPF1-210ENST00000600689 NOP2P46087 812 aaKnown RBP20.72■□□□□ 0.91
UPF1-210ENST00000600689 LRP6O75581 1613 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 MYO1BO43795 1136 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 WTAPQ15007 396 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 CCDC148Q8NFR7 591 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 TMEM87BQ96K49 555 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 MMS19Q96T76 1030 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 EPB41L4AQ9HCS5 686 aaPredicted RBP20.71■□□□□ 0.91
UPF1-210ENST00000600689 POTEB2H3BUK9 544 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 MATR3P43243 847 aaKnown RBP eCLIP20.71■□□□□ 0.91
UPF1-210ENST00000600689 MFSD6Q6ZSS7 791 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 CNGA4Q8IV77 575 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 MICALL1Q8N3F8 863 aa20.71■□□□□ 0.91
UPF1-210ENST00000600689 ANKRD18BA2A2Z9 1011 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 UBXN1Q04323 297 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 IFNL3Q8IZI9 196 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 HNRNPLLQ8WVV9 542 aaKnown RBP20.7■□□□□ 0.9
UPF1-210ENST00000600689 SMARCC1Q92922 1105 aaPredicted RBP20.7■□□□□ 0.9
UPF1-210ENST00000600689 PLIN2Q99541 437 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 ABHD10Q9NUJ1 306 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 SRPRBQ9Y5M8 271 aaKnown RBP20.7■□□□□ 0.9
UPF1-210ENST00000600689 CDHR2Q9BYE9 1310 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 ZNF185O15231 689 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 PSMB7Q99436 277 aa20.7■□□□□ 0.9
UPF1-210ENST00000600689 NUP98P52948 1817 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 NUTM2BA6NNL0 878 aaPredicted RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 NUTM2EB1AL46 878 aaPredicted RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 ATP1A1P05023 1023 aaKnown RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 ARHGAP25P42331 645 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 IRX3P78415 501 aaPredicted RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 CTR9Q6PD62 1173 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 FAM71BQ8TC56 605 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 AFAP1L1Q8TED9 768 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.69■□□□□ 0.9
UPF1-210ENST00000600689 TTF2Q9UNY4 1162 aaKnown RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 ERICH2A1L162 156 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 TRIM75PA6NK02 468 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 ERCC5P28715 1186 aaPredicted RBP20.69■□□□□ 0.9
UPF1-210ENST00000600689 PIP4K2BP78356 416 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 NWD2Q9ULI1 1742 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 USP5P45974 858 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 SLIT2O94813 1529 aa20.69■□□□□ 0.9
UPF1-210ENST00000600689 TRIM49BA6NDI0 452 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 IFNAR1P17181 557 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 CUL4BQ13620 913 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 STRBPQ96SI9 672 aaKnown RBP20.68■□□□□ 0.9
UPF1-210ENST00000600689 GNL3LQ9NVN8 582 aaKnown RBP20.68■□□□□ 0.9
UPF1-210ENST00000600689 FBXO3Q9UK99 471 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 PPP1R3GB7ZBB8 358 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 DDB1Q16531 1140 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 CCDC122Q5T0U0 273 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 NT5DC1Q5TFE4 455 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 VGLL2Q8N8G2 317 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 WASF1Q92558 559 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 GBP3Q9H0R5 595 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 GDAQ9Y2T3 454 aa20.68■□□□□ 0.9
UPF1-210ENST00000600689 DOT1LQ8TEK3 1739 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 MACROD2A1Z1Q3 448 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 MYBL2P10244 700 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 LIG3P49916 1009 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 NAA15Q9BXJ9 866 aaKnown RBP20.67■□□□□ 0.9
UPF1-210ENST00000600689 GGCXP38435 758 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 ATP6V1AP38606 617 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 IL6STP40189 918 aaPredicted RBP20.67■□□□□ 0.9
UPF1-210ENST00000600689 KANK3Q6NY19 840 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 ACBD3Q9H3P7 528 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 JRKLQ9Y4A0 524 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 PDE8AO60658 829 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 CCT5P48643 541 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 WHAMMP3Q1A5X7 153 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 SUSD4Q5VX71 490 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 KIAA1328Q86T90 577 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 TMTC1Q8IUR5 882 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 CRACR2BQ8N4Y2 399 aaPredicted RBP20.67■□□□□ 0.9
UPF1-210ENST00000600689 GPATCH11Q8N954 259 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 TRIML1Q8N9V2 468 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 RASSF8Q8NHQ8 419 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 CRACR2AQ9BSW2 395 aa20.67■□□□□ 0.9
UPF1-210ENST00000600689 V9GY48 417 aaPredicted RBP20.67■□□□□ 0.9
UPF1-210ENST00000600689 MAGEA9P43362 315 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms