RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 ICA1Q05084 483 aa19.26■□□□□ 0.67
LSM4-206ENST00000600289 SMCR8Q8TEV9 937 aaPredicted RBP19.26■□□□□ 0.67
LSM4-206ENST00000600289 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.26■□□□□ 0.67
LSM4-206ENST00000600289 ASCC2Q9H1I8 757 aaPredicted RBP19.26■□□□□ 0.67
LSM4-206ENST00000600289 KANSL2Q9H9L4 492 aa19.26■□□□□ 0.67
LSM4-206ENST00000600289 MKNK2Q9HBH9 465 aa19.26■□□□□ 0.67
LSM4-206ENST00000600289 ARHGEF10LQ9HCE6 1279 aa19.26■□□□□ 0.67
LSM4-206ENST00000600289 A0A1W2PRG0 241 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 PDE4BQ07343 736 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 KIF22Q14807 665 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 SIAH1Q8IUQ4 282 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 GTF3C2Q8WUA4 911 aaPredicted RBP19.25■□□□□ 0.67
LSM4-206ENST00000600289 TMX2Q9Y320 296 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 RAD50Q92878 1312 aa19.25■□□□□ 0.67
LSM4-206ENST00000600289 IGKV6D-41A0A0C4DH26 115 aa19.24■□□□□ 0.67
LSM4-206ENST00000600289 NEFLP07196 543 aa19.24■□□□□ 0.67
LSM4-206ENST00000600289 CENPBP07199 599 aaPredicted RBP19.24■□□□□ 0.67
LSM4-206ENST00000600289 VCAM1P19320 739 aa19.24■□□□□ 0.67
LSM4-206ENST00000600289 FAM110CQ1W6H9 321 aa19.24■□□□□ 0.67
LSM4-206ENST00000600289 CWC27Q6UX04 472 aaKnown RBP19.24■□□□□ 0.67
LSM4-206ENST00000600289 LPAR1Q92633 364 aa19.24■□□□□ 0.67
LSM4-206ENST00000600289 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.24■□□□□ 0.67
LSM4-206ENST00000600289 PLXNB2O15031 1838 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L15C9J2P7 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L13C9JLJ4 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L11C9JVI0 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L18D6R9N7 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L22D6RA61 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L17D6RBQ6 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L19D6RCP7 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L20D6RJB6 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 FGAP02671 866 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 FGRP09769 529 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 PRMT2P55345 433 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 IRX3P78415 501 aaPredicted RBP19.23■□□□□ 0.67
LSM4-206ENST00000600289 USP17L24Q0WX57 530 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 MORF4L1Q9UBU8 362 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 SYNPO2Q9UMS6 1093 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 EYSQ5T1H1 3165 aa19.23■□□□□ 0.67
LSM4-206ENST00000600289 COL11A1P12107 1806 aaPredicted RBP19.23■□□□□ 0.67
LSM4-206ENST00000600289 HERVK_113P62684 666 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 MTFR1Q15390 333 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 ZYXQ15942 572 aaKnown RBP19.22■□□□□ 0.67
LSM4-206ENST00000600289 LBX2Q6XYB7 198 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 CATSPERGQ6ZRH7 1159 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 CLEC10AQ8IUN9 316 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 ZNF444Q8N0Y2 327 aaPredicted RBP19.22■□□□□ 0.67
LSM4-206ENST00000600289 VCPKMTQ9H867 229 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 NYAP2Q9P242 653 aa19.22■□□□□ 0.67
LSM4-206ENST00000600289 ORC4O43929 436 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 EEF2P13639 858 aaKnown RBP19.21■□□□□ 0.67
LSM4-206ENST00000600289 CTGFP29279 349 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 ERICH6BQ5W0A0 696 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 NEDD1Q8NHV4 660 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 CCDC136Q96JN2 1154 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 TRIM47Q96LD4 638 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 P2RX7Q99572 595 aaKnown RBP19.21■□□□□ 0.67
LSM4-206ENST00000600289 DSCC1Q9BVC3 393 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 ARHGAP39Q9C0H5 1083 aa19.21■□□□□ 0.67
LSM4-206ENST00000600289 PRDM1O75626 825 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 PCP11498 1178 aaKnown RBP19.2■□□□□ 0.66
LSM4-206ENST00000600289 PSMC4P43686 418 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 NT5C2P49902 561 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 FCGRTP55899 365 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 STK11IPQ8N1F8 1099 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 ANKRD13CQ8N6S4 541 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 HTATIP2Q9BUP3 242 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 DOCK3Q8IZD9 2030 aa19.2■□□□□ 0.66
LSM4-206ENST00000600289 WDR46O15213 610 aaKnown RBP19.19■□□□□ 0.66
LSM4-206ENST00000600289 CHMLP26374 656 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 CTDSPL2Q05D32 466 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 PPP4R3BQ5MIZ7 849 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 RUFY2Q8WXA3 655 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 MKL1Q969V6 931 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 RPAP3Q9H6T3 665 aaPredicted RBP19.19■□□□□ 0.66
LSM4-206ENST00000600289 STXBP5LQ9Y2K9 1186 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 MYPNQ86TC9 1320 aa19.19■□□□□ 0.66
LSM4-206ENST00000600289 ZNF236Q9UL36 1845 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 TSPY3P0CV98 308 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 TSPY8P0CW00 308 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 HOXD10P28358 340 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 KIAA1755Q5JYT7 1200 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 IL25Q9H293 177 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 GOPCQ9HD26 462 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 MTMR4Q9NYA4 1195 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 RBPJLQ9UBG7 517 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 SRRDQ9UH36 339 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 NR2E3Q9Y5X4 410 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 TACC3Q9Y6A5 838 aa19.18■□□□□ 0.66
LSM4-206ENST00000600289 NOVP48745 357 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 TFAP4Q01664 338 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 BMP2KLQ5H9B9 411 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 GPR153Q6NV75 609 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 POTEEQ6S8J3 1075 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 Q7L0L9 218 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 STAG1Q8WVM7 1258 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 CEP95Q96GE4 821 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 NBPF3Q9H094 633 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 RABGAP1Q9Y3P9 1069 aa19.17■□□□□ 0.66
LSM4-206ENST00000600289 SPDYE16A6NNV3 312 aaPredicted RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms