RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 RANBP6O60518 1105 aaKnown RBP18.04■□□□□ 0.48
LIG1-219ENST00000600055 HERVK_113P62684 666 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 USP17L24Q0WX57 530 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 POTEEQ6S8J3 1075 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 CATSPERGQ6ZRH7 1159 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 SH2D4AQ9H788 454 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 EFCC1Q9HA90 598 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 MTMR4Q9NYA4 1195 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 NYAP2Q9P242 653 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 CLIP2Q9UDT6 1046 aa18.04■□□□□ 0.48
LIG1-219ENST00000600055 GREB1LQ9C091 1923 aaPredicted RBP18.04■□□□□ 0.48
LIG1-219ENST00000600055 RAD21O60216 631 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 NMT2O60551 498 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 AKNAD1Q5T1N1 836 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 STAG1Q8WVM7 1258 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 IL17RBQ9NRM6 502 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 PLIN4Q96Q06 1357 aa18.03■□□□□ 0.48
LIG1-219ENST00000600055 NEDD4P46934 1319 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 PSMC4P43686 418 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 GCLCP48506 637 aaPredicted RBP18.02■□□□□ 0.48
LIG1-219ENST00000600055 KIF22Q14807 665 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 MFSD6Q6ZSS7 791 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 TXNRD2Q9NNW7 524 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 CTNNA3Q9UI47 895 aa18.02■□□□□ 0.48
LIG1-219ENST00000600055 ZSWIM8A7E2V4 1837 aa18.02■□□□□ 0.47
LIG1-219ENST00000600055 TTLL1O95922 423 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 IMMTQ16891 758 aaKnown RBP18.01■□□□□ 0.47
LIG1-219ENST00000600055 FAM110CQ1W6H9 321 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 LRRC47Q8N1G4 583 aaKnown RBP18.01■□□□□ 0.47
LIG1-219ENST00000600055 LPAR1Q92633 364 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 ABHD8Q96I13 439 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 TRIM47Q96LD4 638 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 ESYT1Q9BSJ8 1104 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 TANGO6Q9C0B7 1094 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 GOPCQ9HD26 462 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 RBPJLQ9UBG7 517 aa18.01■□□□□ 0.47
LIG1-219ENST00000600055 F5H6K3 240 aa18■□□□□ 0.47
LIG1-219ENST00000600055 FMNL1O95466 1100 aaPredicted RBP18■□□□□ 0.47
LIG1-219ENST00000600055 KLRC3Q07444 240 aa18■□□□□ 0.47
LIG1-219ENST00000600055 PKN2Q16513 984 aaKnown RBP18■□□□□ 0.47
LIG1-219ENST00000600055 MKL1Q969V6 931 aa18■□□□□ 0.47
LIG1-219ENST00000600055 NUP88Q99567 741 aaPredicted RBP18■□□□□ 0.47
LIG1-219ENST00000600055 PAGR1Q9BTK6 254 aa18■□□□□ 0.47
LIG1-219ENST00000600055 PTPN22Q9Y2R2 807 aa18■□□□□ 0.47
LIG1-219ENST00000600055 SPDYE16A6NNV3 312 aaPredicted RBP17.99■□□□□ 0.47
LIG1-219ENST00000600055 WDR46O15213 610 aaKnown RBP17.99■□□□□ 0.47
LIG1-219ENST00000600055 CNMDO75829 334 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 NDUFB10O96000 172 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 Q3C1V9 767 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 FAM83BQ5T0W9 1011 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 FBXO46Q6PJ61 603 aaPredicted RBP17.99■□□□□ 0.47
LIG1-219ENST00000600055 SAMD1Q6SPF0 538 aaPredicted RBP17.99■□□□□ 0.47
LIG1-219ENST00000600055 CHMP4CQ96CF2 233 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 RNF41Q9H4P4 317 aaPredicted RBP17.99■□□□□ 0.47
LIG1-219ENST00000600055 MORF4L1Q9UBU8 362 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 STX8Q9UNK0 236 aa17.99■□□□□ 0.47
LIG1-219ENST00000600055 PCP11498 1178 aaKnown RBP17.98■□□□□ 0.47
LIG1-219ENST00000600055 FCGRTP55899 365 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 COG2Q14746 738 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 ARHGEF6Q15052 776 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 MAP4K1Q92918 833 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 LSG1Q9H089 658 aaKnown RBP17.98■□□□□ 0.47
LIG1-219ENST00000600055 FBXO28Q9NVF7 368 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 BTBD7Q9P203 1132 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 HPS5Q9UPZ3 1129 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 TAF6LQ9Y6J9 622 aa17.98■□□□□ 0.47
LIG1-219ENST00000600055 U3KPZ7 1027 aaPredicted RBP17.98■□□□□ 0.47
LIG1-219ENST00000600055 B4E1Z4 1266 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 CDC45O75419 566 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 FLOT1O75955 427 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 CYP21A2P08686 494 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 DSG3P32926 999 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 NOVP48745 357 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 ERVK-9P63128 1117 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 ERVK-24P63145 666 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 GPRC5AQ8NFJ5 357 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 GTF3C2Q8WUA4 911 aaPredicted RBP17.97■□□□□ 0.47
LIG1-219ENST00000600055 ZKSCAN3Q9BRR0 538 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 TCP11L1Q9NUJ3 509 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 RABGAP1Q9Y3P9 1069 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 RBM8AQ9Y5S9 174 aaKnown RBP17.97■□□□□ 0.47
LIG1-219ENST00000600055 PTCH2Q9Y6C5 1203 aa17.97■□□□□ 0.47
LIG1-219ENST00000600055 KDM4AO75164 1064 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 CAPN15O75808 1086 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 SLFN13Q68D06 897 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 LBX2Q6XYB7 198 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 KIAA1211Q6ZU35 1233 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 RASGRP2Q7LDG7 609 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 GMCL1P1Q8NEA9 526 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 ESR2Q92731 530 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 ATG4CQ96DT6 458 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 HOXC10Q9NYD6 342 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 SRRDQ9UH36 339 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 GABRQQ9UN88 632 aa17.96■□□□□ 0.47
LIG1-219ENST00000600055 TNPO2O14787 897 aaKnown RBP17.95■□□□□ 0.46
LIG1-219ENST00000600055 GNRH1P01148 92 aa17.95■□□□□ 0.46
LIG1-219ENST00000600055 PRKCZQ05513 592 aa17.95■□□□□ 0.46
LIG1-219ENST00000600055 PPP4R3BQ5MIZ7 849 aa17.95■□□□□ 0.46
LIG1-219ENST00000600055 PORCNQ9H237 461 aa17.95■□□□□ 0.46
LIG1-219ENST00000600055 ANO2Q9NQ90 1003 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms