RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GCNAQ96QF7 691 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 SLC8A2Q9UPR5 921 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 NUB1Q9Y5A7 615 aa22.66■■□□□ 1.22
UPF1-207ENST00000599848 PSTPIP2Q9H939 334 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 ATP10DQ9P241 1426 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 PPP1R2P3Q6NXS1 205 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 KCNH3Q9ULD8 1083 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 NPHP4O75161 1426 aaPredicted RBP22.65■■□□□ 1.22
UPF1-207ENST00000599848 ESYT2A0FGR8 921 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 ZSCAN20P17040 1043 aaPredicted RBP22.65■■□□□ 1.22
UPF1-207ENST00000599848 SELENOSQ9BQE4 189 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 TACC3Q9Y6A5 838 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 FYB2Q5VWT5 728 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 TRIM50Q86XT4 487 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 KIAA0825Q8IV33 1275 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 CTTNBP2NLQ9P2B4 639 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 FAM8A1Q9UBU6 413 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 DNAI1Q9UI46 699 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 ZNF215Q9UL58 517 aaPredicted RBP22.65■■□□□ 1.22
UPF1-207ENST00000599848 GUCA1BQ9UMX6 200 aa22.65■■□□□ 1.22
UPF1-207ENST00000599848 DHX36Q9H2U1 1008 aaKnown RBP22.64■■□□□ 1.22
UPF1-207ENST00000599848 IPO11Q9UI26 975 aaKnown RBP22.64■■□□□ 1.22
UPF1-207ENST00000599848 ZNF233A6NK53 670 aa22.64■■□□□ 1.22
UPF1-207ENST00000599848 RXRAP19793 462 aa22.64■■□□□ 1.22
UPF1-207ENST00000599848 CCPG1Q9ULG6 757 aa22.64■■□□□ 1.22
UPF1-207ENST00000599848 TMEM94Q12767 1356 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 PRDM1O75626 825 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 ATP2A3Q93084 1043 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 DNAJC25Q9H1X3 360 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 SOS2Q07890 1332 aaPredicted RBP22.64■■□□□ 1.21
UPF1-207ENST00000599848 SMCO2A6NFE2 343 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 XKR9Q5GH70 373 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 CCDC25Q86WR0 208 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 FAM81BQ96LP2 452 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 ANO3Q9BYT9 981 aa22.64■■□□□ 1.21
UPF1-207ENST00000599848 MAP3K15Q6ZN16 1313 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 TYRO3Q06418 890 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 POSTNQ15063 836 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 TPH2Q8IWU9 490 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 CCDC122Q5T0U0 273 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 TRIML1Q8N9V2 468 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 PPP1R9BQ96SB3 815 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 SAMD15Q9P1V8 674 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 CTNND2Q9UQB3 1225 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 KIAA0232Q92628 1395 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 SLFN13Q68D06 897 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 ZNF804BA4D1E1 1349 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 TMEM191BP0C7N4 346 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 KIAA1841Q6NSI8 718 aa22.63■■□□□ 1.21
UPF1-207ENST00000599848 ATP5JP18859 108 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 BTDP43251 543 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 FAM102BQ5T8I3 360 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 hCG_1984214I3L0E3 225 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 DDAH1O94760 285 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 SERPINB2P05120 415 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 DMP1Q13316 513 aaPredicted RBP22.62■■□□□ 1.21
UPF1-207ENST00000599848 ZNF713Q8N859 430 aaPredicted RBP22.62■■□□□ 1.21
UPF1-207ENST00000599848 KIF24Q5T7B8 1368 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 CYP26C1Q6V0L0 522 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 C10orf67Q8IYJ2 551 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 C1orf112Q9NSG2 853 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 SLC12A6Q9UHW9 1150 aa22.62■■□□□ 1.21
UPF1-207ENST00000599848 POLGP54098 1239 aaPredicted RBP22.62■■□□□ 1.21
UPF1-207ENST00000599848 ZSCAN23Q3MJ62 389 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 SLC27A2O14975 620 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 TRIM37O94972 964 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 CIAPIN1Q6FI81 312 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 TMED8Q6PL24 325 aaPredicted RBP22.61■■□□□ 1.21
UPF1-207ENST00000599848 USPL1Q5W0Q7 1092 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 SLC10A4Q96EP9 437 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 CIB2O75838 187 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 PHACTR3Q96KR7 559 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 KCNK9Q9NPC2 374 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.61■■□□□ 1.212e-6■■■■■ 39.6
UPF1-207ENST00000599848 UTP11Q9Y3A2 253 aaKnown RBP22.61■■□□□ 1.21
UPF1-207ENST00000599848 EIF4A1P60842 406 aaKnown RBP22.61■■□□□ 1.21
UPF1-207ENST00000599848 ZSWIM4Q9H7M6 989 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 ZBTB40Q9NUA8 1239 aa22.61■■□□□ 1.21
UPF1-207ENST00000599848 A0A1B0GVL5 298 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 AMNQ9BXJ7 453 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 COL4A3BPQ9Y5P4 624 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 PSDA5PKW4 1024 aaPredicted RBP22.6■■□□□ 1.21
UPF1-207ENST00000599848 SUCLG2Q96I99 432 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 ZNF594Q96JF6 807 aaPredicted RBP22.6■■□□□ 1.21
UPF1-207ENST00000599848 METTL14Q9HCE5 456 aaKnown RBP22.6■■□□□ 1.21
UPF1-207ENST00000599848 NPR1P16066 1061 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 PPP2R5EQ16537 467 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 ATRIPQ8WXE1 791 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 CCDC68Q9H2F9 335 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 MYO3BQ8WXR4 1341 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 ZAP70P43403 619 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 ASPRV1Q53RT3 343 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 SERPINA10Q9UK55 444 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 PHLPP2Q6ZVD8 1323 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 SYNRGQ9UMZ2 1314 aa22.6■■□□□ 1.21
UPF1-207ENST00000599848 MAST1Q9Y2H9 1570 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 MAEAQ7L5Y9 396 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 UNC5CLQ8IV45 518 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 ERICH4A6NGS2 130 aa22.59■■□□□ 1.21
UPF1-207ENST00000599848 BPIFB4P59827 614 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms