RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 INPP5BP32019 993 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 MKL1Q969V6 931 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 KLRG1Q96E93 195 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 ARHGEF10LQ9HCE6 1279 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 FZD1Q9UP38 647 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 MTMR7Q9Y216 660 aa17.08■□□□□ 0.32
VRK3-212ENST00000596814 PPP1R12BO60237 982 aaPredicted RBP17.07■□□□□ 0.32
VRK3-212ENST00000596814 DTNBO60941 627 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 KIF5BP33176 963 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 HMGN5P82970 282 aaKnown RBP17.07■□□□□ 0.32
VRK3-212ENST00000596814 PRKG1Q13976 671 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 GRM4Q14833 912 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 MAP1SQ66K74 1059 aaPredicted RBP17.07■□□□□ 0.32
VRK3-212ENST00000596814 SCYL3Q8IZE3 742 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 SMARCC2Q8TAQ2 1214 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.07■□□□□ 0.32
VRK3-212ENST00000596814 DDIT3P35638 169 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 SIAH1Q8IUQ4 282 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 SYNPO2Q9UMS6 1093 aa17.07■□□□□ 0.32
VRK3-212ENST00000596814 USP2O75604 605 aaPredicted RBP17.06■□□□□ 0.32
VRK3-212ENST00000596814 PDHBP11177 359 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 NTRK3Q16288 839 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 RASGRP2Q7LDG7 609 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.06■□□□□ 0.32
VRK3-212ENST00000596814 DDX11Q96FC9 970 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 PICK1Q9NRD5 415 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 MYH6P13533 1939 aa17.06■□□□□ 0.32
VRK3-212ENST00000596814 PLEKHA8P1O95397 391 aa17.05■□□□□ 0.32
VRK3-212ENST00000596814 PARP1P09874 1014 aaKnown RBP17.05■□□□□ 0.32
VRK3-212ENST00000596814 IFNAR1P17181 557 aa17.05■□□□□ 0.32
VRK3-212ENST00000596814 NOL9Q5SY16 702 aaKnown RBP17.05■□□□□ 0.32
VRK3-212ENST00000596814 TMTC3Q6ZXV5 915 aa17.05■□□□□ 0.32
VRK3-212ENST00000596814 ZKSCAN4Q969J2 545 aaPredicted RBP17.05■□□□□ 0.32
VRK3-212ENST00000596814 SH2D4AQ9H788 454 aa17.05■□□□□ 0.32
VRK3-212ENST00000596814 MAD2L2Q9UI95 211 aa17.05■□□□□ 0.32
VRK3-212ENST00000596814 CIZ1Q9ULV3 898 aaPredicted RBP17.05■□□□□ 0.32
VRK3-212ENST00000596814 A0A1W2PRG0 241 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 USP17L5A8MUK1 530 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 PPFIA3O75145 1194 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 SNHG28P0DPA3 235 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 IREB2P48200 963 aaKnown RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 GNAQP50148 359 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 CCDC84Q86UT8 332 aaPredicted RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 FAM184AQ8NB25 1140 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 GMCL1P1Q8NEA9 526 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 ACER1Q8TDN7 264 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 TMX2Q9Y320 296 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 KIF3AQ9Y496 699 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 PHIPQ8WWQ0 1821 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 PALM3A6NDB9 673 aaPredicted RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 TRAF5O00463 557 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 RAD21O60216 631 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 ECE1P42892 770 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 MAP3K9P80192 1104 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 TTLL12Q14166 644 aaPredicted RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 ASPRV1Q53RT3 343 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 SLFN13Q68D06 897 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 USP17L2Q6R6M4 530 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 CMTR1Q8N1G2 835 aaKnown RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 STAG2Q8N3U4 1231 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 PHKBQ93100 1093 aa17.04■□□□□ 0.32
VRK3-212ENST00000596814 ORC3Q9UBD5 711 aaPredicted RBP17.04■□□□□ 0.32
VRK3-212ENST00000596814 STK36Q9NRP7 1315 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 FMNL1O95466 1100 aaPredicted RBP17.03■□□□□ 0.32
VRK3-212ENST00000596814 SSRP1Q08945 709 aaKnown RBP17.03■□□□□ 0.32
VRK3-212ENST00000596814 CCDC96Q2M329 555 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 TRIM22Q8IYM9 498 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 DCAF4Q8WV16 495 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 FEZ1Q99689 392 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 LZTS2Q9BRK4 669 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 SLC26A6Q9BXS9 759 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 AS3MTQ9HBK9 375 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 GOPCQ9HD26 462 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 CHMP5Q9NZZ3 219 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 CSADQ9Y600 493 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 FRMPD2Q68DX3 1309 aaPredicted RBP17.03■□□□□ 0.32
VRK3-212ENST00000596814 CNTNAP5Q8WYK1 1306 aa17.03■□□□□ 0.32
VRK3-212ENST00000596814 F5H6K3 240 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 NDUFB10O96000 172 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 GOLGA8HP0CJ92 632 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 PTPRAP18433 802 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 PDCP20941 246 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 KLRC3Q07444 240 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 ZNF543Q08ER8 600 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 FUT2Q10981 343 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 VGLL4Q14135 290 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 NBPF11Q86T75 865 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 CCDC82Q8N4S0 544 aa17.02■□□□□ 0.32
VRK3-212ENST00000596814 SRBD1Q8N5C6 995 aaKnown RBP17.02■□□□□ 0.32
VRK3-212ENST00000596814 RNF26Q9BY78 433 aaPredicted RBP17.02■□□□□ 0.32
VRK3-212ENST00000596814 KLRF2D3W0D1 207 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 FDPSP14324 419 aaKnown RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 SLC1A4P43007 532 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 MAP3K11Q16584 847 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 GPATCH4Q5T3I0 446 aaKnown RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.01■□□□□ 0.31
VRK3-212ENST00000596814 ARMC9Q7Z3E5 817 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 GMCL1Q96IK5 515 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 VCPKMTQ9H867 229 aa17.01■□□□□ 0.31
VRK3-212ENST00000596814 ZNF408Q9H9D4 720 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms