RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ANKRD23Q86SG2 305 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 DGKHQ86XP1 1220 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 PROCA1Q8NCQ7 364 aaPredicted RBP12.48□□□□□ -0.41
LIG1-210ENST00000596332 NCOA7Q8NI08 942 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 NEK1Q96PY6 1258 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 CFHR5Q9BXR6 569 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 VCPKMTQ9H867 229 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 RNF186Q9NXI6 227 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 LOC285556D6RIA3 1793 aa12.48□□□□□ -0.41
LIG1-210ENST00000596332 MYH8P13535 1937 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 SNHG28P0DPA3 235 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 VCAM1P19320 739 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 CAP1Q01518 475 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 ZYXQ15942 572 aaKnown RBP12.47□□□□□ -0.41
LIG1-210ENST00000596332 USP17L2Q6R6M4 530 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 LRRC47Q8N1G4 583 aaKnown RBP12.47□□□□□ -0.41
LIG1-210ENST00000596332 ZSWIM6Q9HCJ5 1215 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 TOMM22Q9NS69 142 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 SYNPO2Q9UMS6 1093 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 AGTPBP1Q9UPW5 1226 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 RLFQ13129 1914 aa12.47□□□□□ -0.41
LIG1-210ENST00000596332 TNKSO95271 1327 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 NDUFB10O96000 172 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 SLC35G1Q2M3R5 365 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 CATSPERGQ6ZRH7 1159 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 FASTKD5Q7L8L6 764 aaKnown RBP12.46□□□□□ -0.41
LIG1-210ENST00000596332 REM2Q8IYK8 340 aaPredicted RBP12.46□□□□□ -0.41
LIG1-210ENST00000596332 SPICE1Q8N0Z3 855 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 GMCL1P1Q8NEA9 526 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 TCEANC2Q96MN5 208 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 NUP88Q99567 741 aaPredicted RBP12.46□□□□□ -0.41
LIG1-210ENST00000596332 P2RX7Q99572 595 aaKnown RBP12.46□□□□□ -0.41
LIG1-210ENST00000596332 AGXT2Q9BYV1 514 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 TM6SF1Q9BZW5 370 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 LY9Q9HBG7 655 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 SLC45A1Q9Y2W3 748 aa12.46□□□□□ -0.41
LIG1-210ENST00000596332 PDHXO00330 501 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 SH2B2O14492 632 aaPredicted RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 PRC1O43663 620 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 PEX10O60683 326 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 CYP2C8P10632 490 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 TOP1P11387 765 aaKnown RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 RBM25P49756 843 aaKnown RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 SREBF2Q12772 1141 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 RNF20Q5VTR2 975 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 GADL1Q6ZQY3 521 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 DHX32Q7L7V1 743 aaKnown RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 FBXL16Q8N461 479 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 MTA3Q9BTC8 594 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 LRRC2Q9BYS8 371 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 ASCC2Q9H1I8 757 aaPredicted RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 ARHGEF10LQ9HCE6 1279 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 ZCCHC17Q9NP64 241 aaKnown RBP12.45□□□□□ -0.42
LIG1-210ENST00000596332 ADAMTS5Q9UNA0 930 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 STX8Q9UNK0 236 aa12.45□□□□□ -0.42
LIG1-210ENST00000596332 WDR19Q8NEZ3 1342 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 TRPA1O75762 1119 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 CNMDO75829 334 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 ZKSCAN1P17029 563 aaPredicted RBP12.44□□□□□ -0.42
LIG1-210ENST00000596332 RPS6KB1P23443 525 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 MCM5P33992 734 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 USP14P54578 494 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 ANAPC15P60006 121 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 ATP2B2Q01814 1243 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 TROAPQ12815 778 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 CRHR2Q13324 411 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 GMCL1Q96IK5 515 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 JAKMIP1Q96N16 626 aaKnown RBP12.44□□□□□ -0.42
LIG1-210ENST00000596332 RPAP3Q9H6T3 665 aaPredicted RBP12.44□□□□□ -0.42
LIG1-210ENST00000596332 FBXO28Q9NVF7 368 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 RBPJLQ9UBG7 517 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 BRPF3Q9ULD4 1205 aa12.44□□□□□ -0.42
LIG1-210ENST00000596332 IFIT3O14879 490 aaKnown RBP12.43□□□□□ -0.42
LIG1-210ENST00000596332 CA12O43570 354 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TBC1D8O95759 1140 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 PDHBP11177 359 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 MCCP23508 829 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 LIFRP42702 1097 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 EVCP57679 992 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TRDNQ13061 729 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TOB2Q14106 344 aaPredicted RBP12.43□□□□□ -0.42
LIG1-210ENST00000596332 KRT32Q14532 448 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 FAM83BQ5T0W9 1011 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 SLFN13Q68D06 897 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TTBK2Q6IQ55 1244 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 C17orf99Q6UX52 265 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 LBX2Q6XYB7 198 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 RALYLQ86SE5 291 aaKnown RBP12.43□□□□□ -0.42
LIG1-210ENST00000596332 SGMS1Q86VZ5 419 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 IQCA1Q86XH1 822 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 REPS2Q8NFH8 660 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 LPAR1Q92633 364 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TMEM87BQ96K49 555 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 TXNRD2Q9NNW7 524 aa12.43□□□□□ -0.42
LIG1-210ENST00000596332 SPDYE16A6NNV3 312 aaPredicted RBP12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L15C9J2P7 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L13C9JLJ4 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L11C9JVI0 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L18D6R9N7 530 aa12.42□□□□□ -0.42
LIG1-210ENST00000596332 USP17L22D6RA61 530 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms