RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 LSG1Q9H089 658 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 RPAP3Q9H6T3 665 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 VCPKMTQ9H867 229 aa16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 IL17RBQ9NRM6 502 aa16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 MTMR4Q9NYA4 1195 aa16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 CLIP2Q9UDT6 1046 aa16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 PNMA3Q9UL41 463 aa16.33■□□□□ 0.2
SHKBP1-207ENST00000595631 RAD21O60216 631 aa16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 BCRP11274 1271 aa16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 IRX3P78415 501 aaPredicted RBP16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 SH2D4AQ9H788 454 aa16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 NYAP2Q9P242 653 aa16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 CTNNA3Q9UI47 895 aa16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 RBM8AQ9Y5S9 174 aaKnown RBP16.32■□□□□ 0.2
SHKBP1-207ENST00000595631 PLXNB2O15031 1838 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 B4E1Z4 1266 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L15C9J2P7 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L13C9JLJ4 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L11C9JVI0 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L18D6R9N7 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L22D6RA61 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L17D6RBQ6 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L19D6RCP7 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L20D6RJB6 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 CYP21A2P08686 494 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 CTGFP29279 349 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 USP17L24Q0WX57 530 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 POTEEQ6S8J3 1075 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 ANKRD13CQ8N6S4 541 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 MAP4K1Q92918 833 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 CHMP4CQ96CF2 233 aa16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 NUP88Q99567 741 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 U3KPZ7 1027 aaPredicted RBP16.31■□□□□ 0.2
SHKBP1-207ENST00000595631 TTLL1O95922 423 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 HERVK_113P62684 666 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 LACTBP83111 547 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 CATSPERGQ6ZRH7 1159 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 KIAA1211Q6ZU35 1233 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 RASGRP2Q7LDG7 609 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 ERO1AQ96HE7 468 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 ZKSCAN3Q9BRR0 538 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 TANGO6Q9C0B7 1094 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 RNF41Q9H4P4 317 aaPredicted RBP16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 GOPCQ9HD26 462 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 ANO2Q9NQ90 1003 aa16.3■□□□□ 0.2
SHKBP1-207ENST00000595631 KDM4AO75164 1064 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 NDUFB10O96000 172 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 FAM83BQ5T0W9 1011 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 SAMD1Q6SPF0 538 aaPredicted RBP16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 STOX1Q6ZVD7 989 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 CTU1Q7Z7A3 348 aaKnown RBP16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 LPAR1Q92633 364 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 MCOLN1Q9GZU1 580 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 TXNRD2Q9NNW7 524 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 STX8Q9UNK0 236 aa16.29■□□□□ 0.2
SHKBP1-207ENST00000595631 SPDYE16A6NNV3 312 aaPredicted RBP16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 F5H6K3 240 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 WDR46O15213 610 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 PCP11498 1178 aaKnown RBP16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 KLRC3Q07444 240 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 CASC1Q6TDU7 716 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 OTOP1Q7RTM1 612 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 TNS4Q8IZW8 715 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 MKL1Q969V6 931 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 PAGR1Q9BTK6 254 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 FBXO28Q9NVF7 368 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 TRIM17Q9Y577 477 aa16.28■□□□□ 0.2
SHKBP1-207ENST00000595631 ZNFX1Q9P2E3 1918 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 CNMDO75829 334 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 GCLCP48506 637 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 RCSD1Q6JBY9 416 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 ESR2Q92731 530 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 TRIM47Q96LD4 638 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 ZSWIM5Q9P217 1185 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 RBPJLQ9UBG7 517 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 MTMR7Q9Y216 660 aa16.27■□□□□ 0.2
SHKBP1-207ENST00000595631 E7EWF7 191 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 FLOT1O75955 427 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 PSMC4P43686 418 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 NOVP48745 357 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 FAM110CQ1W6H9 321 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 SLFN13Q68D06 897 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 CYB5R4Q7L1T6 521 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 TMEM47Q9BQJ4 181 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 EFCC1Q9HA90 598 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 TCP11L1Q9NUJ3 509 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 MORF4L1Q9UBU8 362 aa16.26■□□□□ 0.19
SHKBP1-207ENST00000595631 MYH6P13533 1939 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 SMCHD1A6NHR9 2005 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 SLC27A2O14975 620 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 COL9A3Q14050 684 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 COG2Q14746 738 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 KIF22Q14807 665 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 NECTIN1Q15223 517 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 Q3C1V9 767 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 GMCL1P1Q8NEA9 526 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 ATG4CQ96DT6 458 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 KRT23Q9C075 422 aa16.25■□□□□ 0.19
SHKBP1-207ENST00000595631 BTBD7Q9P203 1132 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms