RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RPAP3Q9H6T3 665 aaPredicted RBP17.28■□□□□ 0.36
VRK3-206ENST00000594090 NYAP2Q9P242 653 aa17.28■□□□□ 0.36
VRK3-206ENST00000594090 SGSM2O43147 1006 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 ORC4O43929 436 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 CTGFP29279 349 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 ARHGEF6Q15052 776 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 FBXO46Q6PJ61 603 aaPredicted RBP17.27■□□□□ 0.35
VRK3-206ENST00000594090 CATSPERGQ6ZRH7 1159 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 TBC1D10CQ8IV04 446 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 P2RX7Q99572 595 aaKnown RBP17.27■□□□□ 0.35
VRK3-206ENST00000594090 MTMR4Q9NYA4 1195 aa17.27■□□□□ 0.35
VRK3-206ENST00000594090 TSPY2A6NKD2 308 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 PCP11498 1178 aaKnown RBP17.26■□□□□ 0.35
VRK3-206ENST00000594090 PSMC4P43686 418 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 SPICE1Q8N0Z3 855 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 STAG1Q8WVM7 1258 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 ABHD8Q96I13 439 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 GOPCQ9HD26 462 aa17.26■□□□□ 0.35
VRK3-206ENST00000594090 A0A0G2JMZ2 1700 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 ZNF213O14771 459 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 WDR46O15213 610 aaKnown RBP17.25■□□□□ 0.35
VRK3-206ENST00000594090 RANBP6O60518 1105 aaKnown RBP17.25■□□□□ 0.35
VRK3-206ENST00000594090 ECM2O94769 699 aaPredicted RBP17.25■□□□□ 0.35
VRK3-206ENST00000594090 TTLL1O95922 423 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 RRP12Q5JTH9 1297 aaKnown RBP17.25■□□□□ 0.35
VRK3-206ENST00000594090 AKNAD1Q5T1N1 836 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 GTF3C2Q8WUA4 911 aaPredicted RBP17.25■□□□□ 0.35
VRK3-206ENST00000594090 TRIM47Q96LD4 638 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 TANGO6Q9C0B7 1094 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 TOMM22Q9NS69 142 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 MORF4L1Q9UBU8 362 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 CTNNA3Q9UI47 895 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 PARP14Q460N5 1801 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 RLFQ13129 1914 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 HTTP42858 3142 aa17.25■□□□□ 0.35
VRK3-206ENST00000594090 GNRH1P01148 92 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 FCGRTP55899 365 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 IMMTQ16891 758 aaKnown RBP17.24■□□□□ 0.35
VRK3-206ENST00000594090 MFSD6Q6ZSS7 791 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 RNF41Q9H4P4 317 aaPredicted RBP17.24■□□□□ 0.35
VRK3-206ENST00000594090 TXNRD2Q9NNW7 524 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 CLIP2Q9UDT6 1046 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 PTPN22Q9Y2R2 807 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 NEDD4P46934 1319 aa17.24■□□□□ 0.35
VRK3-206ENST00000594090 RAD21O60216 631 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 PTH1RQ03431 593 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 POTEEQ6S8J3 1075 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 LBX2Q6XYB7 198 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 MKL1Q969V6 931 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 IL17RBQ9NRM6 502 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 SYNPO2Q9UMS6 1093 aa17.23■□□□□ 0.35
VRK3-206ENST00000594090 SPDYE16A6NNV3 312 aaPredicted RBP17.22■□□□□ 0.35
VRK3-206ENST00000594090 NMT2O60551 498 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 PEX10O60683 326 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 FMNL1O95466 1100 aaPredicted RBP17.22■□□□□ 0.35
VRK3-206ENST00000594090 PPP4R3BQ5MIZ7 849 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 LRRC47Q8N1G4 583 aaKnown RBP17.22■□□□□ 0.35
VRK3-206ENST00000594090 PAGR1Q9BTK6 254 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 RBPJLQ9UBG7 517 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 HPS5Q9UPZ3 1129 aa17.22■□□□□ 0.35
VRK3-206ENST00000594090 F5H6K3 240 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 NDUFB10O96000 172 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 ERVK-9P63128 1117 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 ERVK-24P63145 666 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 KLRC3Q07444 240 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 COG2Q14746 738 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 ESYT1Q9BSJ8 1104 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 SRRDQ9UH36 339 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 STX8Q9UNK0 236 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 RABGAP1Q9Y3P9 1069 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 PTCH2Q9Y6C5 1203 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 MYPNQ86TC9 1320 aa17.21■□□□□ 0.35
VRK3-206ENST00000594090 CNMDO75829 334 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 FLOT1O75955 427 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 HOXD10P28358 340 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 NOVP48745 357 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 PRMT2P55345 433 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 FAM83BQ5T0W9 1011 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 IFFO2Q5TF58 517 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 GMCL1P1Q8NEA9 526 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 GPRC5AQ8NFJ5 357 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 NKX2-3Q8TAU0 364 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 NUP88Q99567 741 aaPredicted RBP17.21■□□□□ 0.34
VRK3-206ENST00000594090 TCP11L1Q9NUJ3 509 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 HOXC10Q9NYD6 342 aa17.21■□□□□ 0.34
VRK3-206ENST00000594090 U3KPZ7 1027 aaPredicted RBP17.21■□□□□ 0.34
VRK3-206ENST00000594090 TNPO2O14787 897 aaKnown RBP17.2■□□□□ 0.34
VRK3-206ENST00000594090 NT5C2P49902 561 aa17.2■□□□□ 0.34
VRK3-206ENST00000594090 ESR2Q92731 530 aa17.2■□□□□ 0.34
VRK3-206ENST00000594090 FBXO28Q9NVF7 368 aa17.2■□□□□ 0.34
VRK3-206ENST00000594090 B4E1Z4 1266 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 CDC45O75419 566 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 DSG3P32926 999 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 PRKCZQ05513 592 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 Q3C1V9 767 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 ATG4CQ96DT6 458 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 BTBD7Q9P203 1132 aa17.19■□□□□ 0.34
VRK3-206ENST00000594090 CAPN15O75808 1086 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 CYP21A2P08686 494 aa17.18■□□□□ 0.34
VRK3-206ENST00000594090 SLFN13Q68D06 897 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms