RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 RNPC3Q96LT9 517 aaKnown RBP7.43□□□□□ -1.22
SMAD4-208ENST00000589706 MDFIQ99750 246 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 CCDC113Q9H0I3 377 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 ACTR10Q9NZ32 417 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 MSRB2Q9Y3D2 182 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 E9PCH4 1651 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 HFM1A2PYH4 1435 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 CCDC144AA2RUR9 1427 aa7.43□□□□□ -1.22
SMAD4-208ENST00000589706 SHANK3Q9BYB0 1731 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 CCER2I3L3R5 266 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 ENPP3O14638 875 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 NEFMP07197 916 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 EPHA1P21709 976 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 PSAPL1Q6NUJ1 521 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 EHMT1Q9H9B1 1298 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 PCDHB14Q9Y5E9 798 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 TNS3Q68CZ2 1445 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 DLC1Q96QB1 1528 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 CDC42BPGQ6DT37 1551 aa7.42□□□□□ -1.22
SMAD4-208ENST00000589706 H3BRJ5 948 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 GSTP1P09211 210 aaKnown RBP7.41□□□□□ -1.22
SMAD4-208ENST00000589706 MAP1SQ66K74 1059 aaPredicted RBP7.41□□□□□ -1.22
SMAD4-208ENST00000589706 MPRIPQ6WCQ1 1025 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 FCHSD1Q86WN1 690 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 KCNB2Q92953 911 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 SOX17Q9H6I2 414 aaPredicted RBP7.41□□□□□ -1.22
SMAD4-208ENST00000589706 ST7Q9NRC1 585 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 POLR3KQ9Y2Y1 108 aaPredicted RBP7.41□□□□□ -1.22
SMAD4-208ENST00000589706 SPATA31A1Q5TZJ5 1347 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 ABCA3Q99758 1704 aa7.41□□□□□ -1.22
SMAD4-208ENST00000589706 ELOA3CA0A087WX78 387 aaPredicted RBP7.4□□□□□ -1.22
SMAD4-208ENST00000589706 ELOA3DA6NLF2 546 aaPredicted RBP7.4□□□□□ -1.22
SMAD4-208ENST00000589706 NEURL1BA8MQ27 555 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 GRIN3BO60391 1043 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 RGS9O75916 674 aaPredicted RBP7.4□□□□□ -1.22
SMAD4-208ENST00000589706 ATE1O95260 518 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 MAP2K3P46734 347 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 CASP7P55210 303 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 GSTM4Q03013 218 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 DDR2Q16832 855 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 ELOA3BQ3SY89 546 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 LSRQ86X29 649 aaPredicted RBP7.4□□□□□ -1.22
SMAD4-208ENST00000589706 ELOA3Q8NG57 546 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 TNKS2Q9H2K2 1166 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 CACNA2D2Q9NY47 1150 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 NSFL1CQ9UNZ2 370 aaKnown RBP7.4□□□□□ -1.22
SMAD4-208ENST00000589706 NAIPQ13075 1403 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 ANKRD50Q9ULJ7 1429 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 NEXMIFQ5QGS0 1516 aa7.4□□□□□ -1.22
SMAD4-208ENST00000589706 COL14A1Q05707 1796 aaKnown RBP7.39□□□□□ -1.23
SMAD4-208ENST00000589706 PRAG1Q86YV5 1406 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 SBNO1A3KN83 1393 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 ARHGEF10O15013 1369 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 PLSCR1O15162 318 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 EIF4EBP3O60516 100 aaPredicted RBP7.39□□□□□ -1.23
SMAD4-208ENST00000589706 CDC25BP30305 580 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 IFRD2Q12894 506 aaPredicted RBP7.39□□□□□ -1.23
SMAD4-208ENST00000589706 GAS6Q14393 721 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 FXNQ16595 210 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.39□□□□□ -1.23
SMAD4-208ENST00000589706 DNAJC5GQ8N7S2 189 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 IPO4Q8TEX9 1081 aaKnown RBP7.39□□□□□ -1.23
SMAD4-208ENST00000589706 NUDT8Q8WV74 236 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 DNAJC7Q99615 494 aa7.39□□□□□ -1.23
SMAD4-208ENST00000589706 RRBP1Q9P2E9 1410 aaKnown RBP7.38□□□□□ -1.23
SMAD4-208ENST00000589706 PDPK1O15530 556 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 ALAS2P22557 587 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 ARL4DP49703 201 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 CHMP4BP1P59074 171 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 PPP2R5EQ16537 467 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 LARP1BQ659C4 914 aaKnown RBP7.38□□□□□ -1.23
SMAD4-208ENST00000589706 HGSNATQ68CP4 663 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 WAPLQ7Z5K2 1190 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 LILRB2Q8N423 598 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 IL22RA1Q8N6P7 574 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 GPBAR1Q8TDU6 330 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 SLC7A3Q8WY07 619 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 NAP1L5Q96NT1 182 aaPredicted RBP7.38□□□□□ -1.23
SMAD4-208ENST00000589706 ZC3H12CQ9C0D7 883 aaKnown RBP7.38□□□□□ -1.23
SMAD4-208ENST00000589706 MTFR1LQ9H019 292 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 MBIPQ9NS73 344 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 PCDHA4Q9UN74 947 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 MAPK8IP1Q9UQF2 711 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 KIF1AQ12756 1690 aa7.38□□□□□ -1.23
SMAD4-208ENST00000589706 MAP3K5Q99683 1374 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 CYP11A1P05108 521 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 CDK8P49336 464 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 C19orf57Q0VDD7 668 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 RASGRF1Q13972 1273 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 GRIK5Q16478 980 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 LRRFIP1Q32MZ4 808 aaKnown RBP7.37□□□□□ -1.23
SMAD4-208ENST00000589706 FAM117BQ6P1L5 589 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 C19orf47Q8N9M1 422 aaKnown RBP7.37□□□□□ -1.23
SMAD4-208ENST00000589706 SH3TC2Q8TF17 1288 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 WNT8BQ93098 351 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 ACSBG1Q96GR2 724 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 PDCL3Q9H2J4 239 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 GGA1Q9UJY5 639 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 PPME1Q9Y570 386 aa7.37□□□□□ -1.23
SMAD4-208ENST00000589706 PRR36Q9H6K5 1346 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms