RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 TEKT1Q969V4 418 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 PGBD1Q96JS3 809 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 PANK2Q9BZ23 570 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 KAT14Q9H8E8 782 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 ZNF287Q9HBT7 754 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 USP40Q9NVE5 1235 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 RTEL1Q9NZ71 1219 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 RCOR1Q9UKL0 485 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 CD2APQ9Y5K6 639 aa10.15□□□□□ -0.78
SMAD4-206ENST00000588860 FER1L6Q2WGJ9 1857 aa10.15□□□□□ -0.79
SMAD4-206ENST00000588860 USP17L3A6NCW0 530 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 USP17L4A6NCW7 530 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 C21orf2O43822 256 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 PLEKHA8P1O95397 391 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 RASA1P20936 1047 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 GUCY1A2P33402 732 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 NASPP49321 788 aaPredicted RBP10.14□□□□□ -0.79
SMAD4-206ENST00000588860 CDK8P49336 464 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 EMP3P54852 163 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 STK38Q15208 465 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 SAFBQ15424 915 aaKnown RBP eCLIP10.14□□□□□ -0.79
SMAD4-206ENST00000588860 MYSM1Q5VVJ2 828 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 HHIPL2Q6UWX4 724 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 TMTC3Q6ZXV5 915 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 USP17L1Q7RTZ2 530 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 RNF26Q9BY78 433 aaPredicted RBP10.14□□□□□ -0.79
SMAD4-206ENST00000588860 RBSNQ9H1K0 784 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 KCNQ5Q9NR82 932 aa10.14□□□□□ -0.79
SMAD4-206ENST00000588860 CNTNAP5Q8WYK1 1306 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 PPIP5K2O43314 1243 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 DPEP1P16444 411 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 CRKP46108 304 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 ME1P48163 572 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 FKBP1AP62942 108 aaKnown RBP10.13□□□□□ -0.79
SMAD4-206ENST00000588860 KIAA2012Q0VF49 1180 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 TROAPQ12815 778 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 SF3A1Q15459 793 aaKnown RBP10.13□□□□□ -0.79
SMAD4-206ENST00000588860 CCDC93Q567U6 631 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 DACT2Q5SW24 774 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 STRIP1Q5VSL9 837 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 RCSD1Q6JBY9 416 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 CDC42EP5Q6NZY7 148 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 DGKHQ86XP1 1220 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 TTLL6Q8N841 843 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.13□□□□□ -0.79
SMAD4-206ENST00000588860 NUP62CLQ9H1M0 184 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 IL17RBQ9NRM6 502 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 TCP11L1Q9NUJ3 509 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 KCNJ14Q9UNX9 436 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 CLIC4Q9Y696 253 aa10.13□□□□□ -0.79
SMAD4-206ENST00000588860 hCG_1642624A0A1W2PR95 340 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 PRPF3O43395 683 aaKnown RBP10.12□□□□□ -0.79
SMAD4-206ENST00000588860 WDHD1O75717 1129 aaPredicted RBP10.12□□□□□ -0.79
SMAD4-206ENST00000588860 YEATS4O95619 227 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 MMP1P03956 469 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 XBP1P17861 261 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 KIF5BP33176 963 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 FUT2Q10981 343 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 FSTL1Q12841 308 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 GRIPAP1Q4V328 841 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 ANO1Q5XXA6 986 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 CCDC73Q6ZRK6 1079 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 KIAA0825Q8IV33 1275 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 CCAR1Q8IX12 1150 aaKnown RBP10.12□□□□□ -0.79
SMAD4-206ENST00000588860 PNMA1Q8ND90 353 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 KCNG4Q8TDN1 519 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 ANKS1AQ92625 1134 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 CLSTN2Q9H4D0 955 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 NMRK2Q9NPI5 230 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 DDX4Q9NQI0 724 aaKnown RBP10.12□□□□□ -0.79
SMAD4-206ENST00000588860 DDX19AQ9NUU7 478 aaKnown RBP10.12□□□□□ -0.79
SMAD4-206ENST00000588860 POLR3EQ9NVU0 708 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 DACT1Q9NYF0 836 aa10.12□□□□□ -0.79
SMAD4-206ENST00000588860 SPTLC2O15270 562 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 U2AF2P26368 475 aaKnown RBP eCLIP10.11□□□□□ -0.792e-6■■■□□ 17.2
SMAD4-206ENST00000588860 RBM5P52756 815 aaKnown RBP eCLIP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 GRM4Q14833 912 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 MAP3K11Q16584 847 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 APOBEC3HQ6NTF7 200 aaKnown RBP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 NOSTRINQ8IVI9 506 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 DIS3L2Q8IYB7 885 aaKnown RBP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 RTKN2Q8IZC4 609 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 SRBD1Q8N5C6 995 aaKnown RBP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 FSIP1Q8NA03 581 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 LINC00301Q8NCQ3 95 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 NEDD1Q8NHV4 660 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 ZDHHC15Q96MV8 337 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 TMEM47Q9BQJ4 181 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 OSBPL5Q9H0X9 879 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 TNMDQ9H2S6 317 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 GOLPH3LQ9H4A5 285 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 VPS54Q9P1Q0 977 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 MTMR7Q9Y216 660 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 V9GY48 417 aaPredicted RBP10.11□□□□□ -0.79
SMAD4-206ENST00000588860 PLIN4Q96Q06 1357 aa10.11□□□□□ -0.79
SMAD4-206ENST00000588860 COL4A5P29400 1685 aa10.1□□□□□ -0.79
SMAD4-206ENST00000588860 BTBD18B2RXH4 712 aa10.1□□□□□ -0.79
SMAD4-206ENST00000588860 NR1I2O75469 434 aa10.1□□□□□ -0.79
SMAD4-206ENST00000588860 HLA-DOAP06340 250 aa10.1□□□□□ -0.79
SMAD4-206ENST00000588860 KRT2P35908 639 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms