RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 HTTP42858 3142 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 F8W031 263 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 FMNL1O95466 1100 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 CRKP46108 304 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 RESTQ13127 1097 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 TRIM29Q14134 588 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 NTRK3Q16288 839 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 PPP4R3BQ5MIZ7 849 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 C16orf86Q6ZW13 317 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 ARMC9Q7Z3E5 817 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 BRAPQ7Z569 592 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 CTU1Q7Z7A3 348 aaKnown RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 MAPKAPK5Q8IW41 473 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 ENAHQ8N8S7 591 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 ZNF296Q8WUU4 475 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 PRMT6Q96LA8 375 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 ZKSCAN3Q9BRR0 538 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 FAM217BQ9NTX9 383 aaPredicted RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 USP40Q9NVE5 1235 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 FLT1P17948 1338 aa12.06□□□□□ -0.48
LIG3-203ENST00000585370 MKI67P46013 3256 aaKnown RBP12.06□□□□□ -0.48
LIG3-203ENST00000585370 CYP2D6P10635 497 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 CDC27P30260 824 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 KIF5BP33176 963 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 GNAQP50148 359 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 TFAP4Q01664 338 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 AKAP17AQ02040 695 aaKnown RBP12.05□□□□□ -0.48
LIG3-203ENST00000585370 DNM1Q05193 864 aaKnown RBP12.05□□□□□ -0.48
LIG3-203ENST00000585370 CFAP100Q494V2 611 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 STK11IPQ8N1F8 1099 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 NKX2-3Q8TAU0 364 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 DHX36Q9H2U1 1008 aaKnown RBP12.05□□□□□ -0.48
LIG3-203ENST00000585370 R3HDMLQ9H3Y0 253 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 SENP2Q9HC62 589 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 RBM27Q9P2N5 1060 aaKnown RBP12.05□□□□□ -0.48
LIG3-203ENST00000585370 SWAP70Q9UH65 585 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 CNPY2Q9Y2B0 182 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 BRCA2P51587 3418 aa12.05□□□□□ -0.48
LIG3-203ENST00000585370 SPDYE2BA6NHP3 402 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 PRDM1O75626 825 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 LETM1O95202 739 aaPredicted RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 DEXIO95424 95 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 HLA-DOAP06340 250 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 SPDYE6P0CI01 402 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 TSPY3P0CV98 308 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 TSPY8P0CW00 308 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 XBP1P17861 261 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 CDK8P49336 464 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 MAP3K11Q16584 847 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 L1TD1Q5T7N2 865 aaKnown RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 SPRYD7Q5W111 196 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 APOBEC3HQ6NTF7 200 aaKnown RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 CDC42EP5Q6NZY7 148 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 CRACR2BQ8N4Y2 399 aaPredicted RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 NEDD1Q8NHV4 660 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 CTCFLQ8NI51 663 aaPredicted RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 NUP133Q8WUM0 1156 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 ALG1Q9BT22 464 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 IDI2Q9BXS1 227 aa12.04□□□□□ -0.48
LIG3-203ENST00000585370 RNF26Q9BY78 433 aaPredicted RBP12.04□□□□□ -0.48
LIG3-203ENST00000585370 BAZ2AQ9UIF9 1905 aaKnown RBP12.03□□□□□ -0.48
LIG3-203ENST00000585370 CLRN2A0PK11 232 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 GPR25O00155 361 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 PRPF3O43395 683 aaKnown RBP12.03□□□□□ -0.48
LIG3-203ENST00000585370 WDHD1O75717 1129 aaPredicted RBP12.03□□□□□ -0.48
LIG3-203ENST00000585370 DEKP35659 375 aaKnown RBP12.03□□□□□ -0.48
LIG3-203ENST00000585370 PLCD1P51178 756 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SOX10P56693 466 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SREBF2Q12772 1141 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 TROAPQ12815 778 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SAFBQ15424 915 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIG3-203ENST00000585370 FERMT3Q86UX7 667 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SPATA32Q96LK8 384 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 LZTS2Q9BRK4 669 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SLC26A6Q9BXS9 759 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 EHD4Q9H223 541 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 KAT14Q9H8E8 782 aa12.03□□□□□ -0.48
LIG3-203ENST00000585370 SAP30BPQ9UHR5 308 aaKnown RBP12.03□□□□□ -0.48
LIG3-203ENST00000585370 LAMB1P07942 1786 aa12.02□□□□□ -0.48
LIG3-203ENST00000585370 SSC5DA1L4H1 1573 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 GOLGA6L4A6NEF3 574 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 MYO1BO43795 1136 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 RASA1P20936 1047 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 PKN2Q16513 984 aaKnown RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 FOXD4L6Q3SYB3 417 aaPredicted RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 NOM1Q5C9Z4 860 aaKnown RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 FAM47AQ5JRC9 791 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 NBPF12Q5TAG4 269 aaPredicted RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 FOXD4L3Q6VB84 417 aaPredicted RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 RAB11FIP4Q86YS3 637 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 FAM177A1Q8N128 213 aaPredicted RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 GPT2Q8TD30 523 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 SLC10A4Q96EP9 437 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 DYNLL2Q96FJ2 89 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 CLMNQ96JQ2 1002 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 CCDC17Q96LX7 622 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 MYL10Q9BUA6 226 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 CFHR5Q9BXR6 569 aa12.02□□□□□ -0.49
LIG3-203ENST00000585370 OSBPL5Q9H0X9 879 aaPredicted RBP12.02□□□□□ -0.49
LIG3-203ENST00000585370 VEZTQ9HBM0 779 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 173.2 ms