RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 DUSP4Q13115 394 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 ORC1Q13415 861 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 SF3B2Q13435 895 aaKnown RBP6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 OLFML2BQ68BL8 750 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 CDH24Q86UP0 819 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 XAGE3Q8WTP9 111 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 VWCEQ96DN2 955 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 USP40Q9NVE5 1235 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 SLPIP03973 132 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 CDR1P51861 262 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 FKBP4Q02790 459 aaKnown RBP eCLIP6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 NKG7Q16617 165 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 FERMT3Q86UX7 667 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 GRIN3AQ8TCU5 1115 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 EGFL7Q9UHF1 273 aa6.49□□□□□ -1.37
SMCHD1-209ENST00000583441 CYR61O00622 381 aa6.48□□□□□ -1.37
SMCHD1-209ENST00000583441 XRCC5P13010 732 aaKnown RBP6.48□□□□□ -1.37
SMCHD1-209ENST00000583441 PLCB3Q01970 1234 aa6.48□□□□□ -1.37
SMCHD1-209ENST00000583441 CPZQ66K79 652 aa6.48□□□□□ -1.37
SMCHD1-209ENST00000583441 ZFPM1Q8IX07 1006 aa6.48□□□□□ -1.37
SMCHD1-209ENST00000583441 C1QTNF3-AMACRE9PGA6 284 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 SLURP1P55000 103 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 MFAP1P55081 439 aaKnown RBP6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 CCDC27Q2M243 656 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 HID1Q8IV36 788 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 NECAB3Q96P71 396 aaPredicted RBP6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 AKAP2Q9Y2D5 859 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 SAMM50Q9Y512 469 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 PCDHA11Q9Y5I1 949 aa6.47□□□□□ -1.37
SMCHD1-209ENST00000583441 PRAMEF13Q5VWM6 474 aa6.46□□□□□ -1.38
SMCHD1-209ENST00000583441 TSPYL5Q86VY4 417 aaPredicted RBP6.46□□□□□ -1.38
SMCHD1-209ENST00000583441 WNT10AQ9GZT5 417 aa6.46□□□□□ -1.38
SMCHD1-209ENST00000583441 CST3P01034 146 aaPredicted RBP6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 TACR2P21452 398 aa6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 ETF1P62495 437 aaKnown RBP6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 NLRX1Q86UT6 975 aa6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 LSRQ86X29 649 aaPredicted RBP6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 Q96M66 194 aa6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 BRPF3Q9ULD4 1205 aa6.45□□□□□ -1.38
SMCHD1-209ENST00000583441 SOWAHDA6NJG2 315 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 ABLIM1O14639 778 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 BMP6P22004 513 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 ETV3P41162 512 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 GPR62Q9BZJ7 368 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 EBF1Q9UH73 591 aa6.44□□□□□ -1.38
SMCHD1-209ENST00000583441 EIF1AYO14602 144 aaKnown RBP6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 FFAR3O14843 346 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 SERPINB4P48594 390 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 YBX1P67809 324 aaKnown RBP6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 INPP5AQ14642 412 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 LRRC14Q15048 493 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 NT5DC1Q5TFE4 455 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 LLGL2Q6P1M3 1020 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 HDXQ7Z353 690 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 LDHDQ86WU2 507 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 IGDCC3Q8IVU1 814 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 CRTAC1Q9NQ79 661 aa6.43□□□□□ -1.38
SMCHD1-209ENST00000583441 ERCC3P19447 782 aa6.42□□□□□ -1.38
SMCHD1-209ENST00000583441 LRFN4Q6PJG9 635 aa6.42□□□□□ -1.38
SMCHD1-209ENST00000583441 USP51Q70EK9 711 aa6.42□□□□□ -1.38
SMCHD1-209ENST00000583441 NLGN1Q8N2Q7 840 aa6.42□□□□□ -1.38
SMCHD1-209ENST00000583441 EPS8L3Q8TE67 593 aaKnown RBP6.42□□□□□ -1.38
SMCHD1-209ENST00000583441 ICMTO60725 284 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 ABL1P00519 1130 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 ITGB3P05106 788 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 SDHBP21912 280 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 ACVRL1P37023 503 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 PDE3BQ13370 1112 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 SLC14A2Q15849 920 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 GLYCTKQ8IVS8 523 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 ANO2Q9NQ90 1003 aa6.41□□□□□ -1.38
SMCHD1-209ENST00000583441 NOTOA8MTQ0 251 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 H3BRB1 525 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 BUB1BO60566 1050 aaPredicted RBP6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 ZNF20P17024 532 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 CAP1Q01518 475 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 SCARA3Q6AZY7 606 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 RGS22Q8NE09 1264 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 LINC01599Q8WXQ3 324 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 PLPPR2Q96GM1 343 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 C1QTNF3Q9BXJ4 246 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 TUT1Q9H6E5 874 aaKnown RBP6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 BIN2Q9UBW5 565 aaPredicted RBP6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 KCNH3Q9ULD8 1083 aa6.4□□□□□ -1.38
SMCHD1-209ENST00000583441 TGM1P22735 817 aa6.39□□□□□ -1.39
SMCHD1-209ENST00000583441 NLRP2Q9NX02 1062 aa6.39□□□□□ -1.39
SMCHD1-209ENST00000583441 CNR2P34972 360 aa6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 TEKQ02763 1124 aa6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 ZNF211Q13398 564 aaPredicted RBP6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 Q8N1X5 172 aa6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 LOXL4Q96JB6 756 aa6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 C8orf49Q96NF6 230 aa6.38□□□□□ -1.39
SMCHD1-209ENST00000583441 EFEMP2O95967 443 aa6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 PNLIPP16233 465 aa6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 RANGAP1P46060 587 aaPredicted RBP6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 TMC6Q7Z403 805 aa6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 DDX1Q92499 740 aaKnown RBP6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 KRTAP3-1Q9BYR8 98 aa6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 BCO2Q9BYV7 579 aa6.37□□□□□ -1.39
SMCHD1-209ENST00000583441 PCDHA5Q9Y5H7 936 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms