RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 SNX17Q15036 470 aa8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 SPPL2CQ8IUH8 684 aa8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 TMEM151BQ8IW70 566 aa8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 SYTL4Q96C24 671 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 EBF1Q9UH73 591 aa8.45□□□□□ -1.06
SMCHD1-207ENST00000581711 CCDC85BQ15834 202 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-207ENST00000581711 DBX2Q6ZNG2 339 aa8.44□□□□□ -1.06
SMCHD1-207ENST00000581711 ZSCAN29Q8IWY8 852 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-207ENST00000581711 SHISA4Q96DD7 197 aa8.44□□□□□ -1.06
SMCHD1-207ENST00000581711 ADAM30Q9UKF2 790 aa8.44□□□□□ -1.06
SMCHD1-207ENST00000581711 PSPNO60542 156 aa8.43□□□□□ -1.06
SMCHD1-207ENST00000581711 PDE4CQ08493 712 aa8.43□□□□□ -1.06
SMCHD1-207ENST00000581711 AGMOQ6ZNB7 445 aa8.43□□□□□ -1.06
SMCHD1-207ENST00000581711 ANKS4BQ8N8V4 417 aa8.43□□□□□ -1.06
SMCHD1-207ENST00000581711 CYB5D2Q8WUJ1 264 aa8.43□□□□□ -1.06
SMCHD1-207ENST00000581711 GALK1P51570 392 aa8.42□□□□□ -1.06
SMCHD1-207ENST00000581711 DUSP4Q13115 394 aa8.42□□□□□ -1.06
SMCHD1-207ENST00000581711 CXorf38Q8TB03 319 aa8.42□□□□□ -1.06
SMCHD1-207ENST00000581711 XYLT2Q9H1B5 865 aa8.42□□□□□ -1.06
SMCHD1-207ENST00000581711 MIR1-1HGQ9H1L0 117 aa8.42□□□□□ -1.06
SMCHD1-207ENST00000581711 LRRN2O75325 713 aa8.41□□□□□ -1.06
SMCHD1-207ENST00000581711 PI3P19957 117 aa8.41□□□□□ -1.06
SMCHD1-207ENST00000581711 KRTAP10-2P60368 255 aa8.41□□□□□ -1.06
SMCHD1-207ENST00000581711 TEKQ02763 1124 aa8.41□□□□□ -1.06
SMCHD1-207ENST00000581711 OR14I1A6ND48 311 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 LIG3P49916 1009 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 TSNAXIP1Q2TAA8 658 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 PANK1Q8TE04 598 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 RNF141Q8WVD5 230 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 LINC01599Q8WXQ3 324 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 ASB16Q96NS5 453 aa8.4□□□□□ -1.06
SMCHD1-207ENST00000581711 SASH1O94885 1247 aa8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 RPL6Q02878 288 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 MAP3K11Q16584 847 aa8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 SKOR2Q2VWA4 1001 aaPredicted RBP8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 SIGLEC10Q96LC7 697 aa8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 FRMD6Q96NE9 622 aa8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 MBD1Q9UIS9 605 aaPredicted RBP8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 IRAK3Q9Y616 596 aa8.39□□□□□ -1.07
SMCHD1-207ENST00000581711 NOTOA8MTQ0 251 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 UPK3BL1B0FP48 263 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 UPK3BL2E5RIL1 263 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 ADGRF1Q5T601 910 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 FAM13CQ8NE31 585 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 CORINQ9Y5Q5 1042 aa8.38□□□□□ -1.07
SMCHD1-207ENST00000581711 RBM47A0AV96 593 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 SHISA3A0PJX4 238 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 OTOL1A6NHN0 477 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 EFEMP2O95967 443 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 TFE3P19532 575 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 EIF4BP23588 611 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 SRSF3P84103 164 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 PRRT2Q7Z6L0 340 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 NLRX1Q86UT6 975 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 SIRT2Q8IXJ6 389 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 DACT3Q96B18 629 aaPredicted RBP8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 G6PC3Q9BUM1 346 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 ZNF281Q9Y2X9 895 aa8.37□□□□□ -1.07
SMCHD1-207ENST00000581711 HRKO00198 91 aa8.36□□□□□ -1.07
SMCHD1-207ENST00000581711 P4HBP07237 508 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-207ENST00000581711 AFF3P51826 1226 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-207ENST00000581711 YARSP54577 528 aaKnown RBP8.36□□□□□ -1.07
SMCHD1-207ENST00000581711 LDHBP07195 334 aaKnown RBP8.35□□□□□ -1.07
SMCHD1-207ENST00000581711 PLCG1P19174 1290 aa8.35□□□□□ -1.07
SMCHD1-207ENST00000581711 GNA15P30679 374 aa8.35□□□□□ -1.07
SMCHD1-207ENST00000581711 EPHB3P54753 998 aa8.35□□□□□ -1.07
SMCHD1-207ENST00000581711 JARID2Q92833 1246 aaPredicted RBP8.35□□□□□ -1.07
SMCHD1-207ENST00000581711 SLC22A31A6NKX4 558 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 CELA3BP08861 270 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 NFKB2Q00653 900 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 GGNQ86UU5 652 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 FEZF2Q8TBJ5 459 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 KREMEN1Q96MU8 473 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 ASPNQ9BXN1 380 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 SIRT5Q9NXA8 310 aa8.34□□□□□ -1.07
SMCHD1-207ENST00000581711 USP2O75604 605 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-207ENST00000581711 TNNI2P48788 182 aa8.33□□□□□ -1.08
SMCHD1-207ENST00000581711 TMEM201Q5SNT2 666 aa8.33□□□□□ -1.08
SMCHD1-207ENST00000581711 SLFN12Q8IYM2 578 aa8.33□□□□□ -1.08
SMCHD1-207ENST00000581711 EPB41L4AQ9HCS5 686 aaPredicted RBP8.33□□□□□ -1.08
SMCHD1-207ENST00000581711 N4BP3O15049 544 aa8.32□□□□□ -1.08
SMCHD1-207ENST00000581711 VIPR1P32241 457 aa8.32□□□□□ -1.08
SMCHD1-207ENST00000581711 CLEC16AQ2KHT3 1053 aa8.32□□□□□ -1.08
SMCHD1-207ENST00000581711 CNTD2Q9H8S5 307 aa8.32□□□□□ -1.08
SMCHD1-207ENST00000581711 TLR6Q9Y2C9 796 aa8.32□□□□□ -1.08
SMCHD1-207ENST00000581711 BRD1O95696 1058 aa8.31□□□□□ -1.08
SMCHD1-207ENST00000581711 ERICH6BQ5W0A0 696 aa8.31□□□□□ -1.08
SMCHD1-207ENST00000581711 CRTAC1Q9NQ79 661 aa8.31□□□□□ -1.08
SMCHD1-207ENST00000581711 IRS4O14654 1257 aaPredicted RBP8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 NRDCO43847 1150 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 RPL10P27635 214 aaKnown RBP8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 VMACQ2NL98 169 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 KRTAP5-3Q6L8H2 238 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 RNF111Q6ZNA4 994 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 ZDHHC14Q8IZN3 488 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 AK5Q9Y6K8 562 aa8.3□□□□□ -1.08
SMCHD1-207ENST00000581711 ADRB1P08588 477 aa8.29□□□□□ -1.08
SMCHD1-207ENST00000581711 SLC14A2Q15849 920 aa8.29□□□□□ -1.08
SMCHD1-207ENST00000581711 WAPLQ7Z5K2 1190 aa8.29□□□□□ -1.08
SMCHD1-207ENST00000581711 SP8Q8IXZ3 490 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms